Starting with inventory: 0000003479-78979af0dee9db402dadc74184a283a562dcbae403f670424fc199a525612919 [TAG paris-0.4 Stephane Zaleski **20140811150938 Ignore-this: ebee6b404d011012ae80e469049e0c9b ] hash: 0000002358-f2ac7215a7b9b75638a0960d1b795a3dc8195363c782c0c9fc0c4d3934bc050f [Corrections to author's list Stephane Zaleski **20140811154944 Ignore-this: 4edaa6570df0aff240d9c9ff70a8498 ] hash: 0000000354-72bc9b9cf44dbc06c689358e14f30bdedc6f91c6599ed249b5916914d53747c5 [added vtk2array.m Stephane Zaleski **20140815072513 Ignore-this: 2e09ef5b683c33b50e9d5407ec964007 ] hash: 0000008132-1d8d409e10db28cb6da5cd51d4e7c4a8fdceea762a6b60c838811cf92d25c109 [Phase flags for VOF lcmalan@gmail.com**20140820092757 Ignore-this: 2a02aa87221d5ea809b611eac5912175 Additional flag to determine phase of the cell node ] hash: 0000000821-7e1d11b4602e5919eee18477ab0efec05a117a540a5c62ed154ae9181f055c71 [Free surface cleanup lcmalan@gmail.com**20140820160455 Ignore-this: 8c8fe2b926e3b239ab98ed830daf2fac ] hash: 0000001866-8609b3e077878aa74f78147c6b5734cbf4b444d29c5ff4c0b5ff94041ab29d94 [Free surface module lcmalan@gmail.com**20140820170429 Ignore-this: ce79131972a27dc5e30f1e0451131879 Module created to group all exclusive FS variables ] hash: 0000001431-f3edd20e3a12e7fedba55717b2593994ab9c857c338aaed6968b7d26539b2f43 [Free surface extrapolated velocities set using topology lcmalan@gmail.com**20140821090752 Ignore-this: 2ab36fba50ea9e06e26037c00e4401ce Added set_topology in freesurface.f90. Other free surface corrections. ] hash: 0000008476-eb89470a384e026818a1c51e716c0cc69115ec18313240da62c6774b180d71f1 [Asymmetric 5 star Poisson branches with interface pressure jump for FS lcmalan@gmail.com**20140821094844 Ignore-this: db6d4d453a8c618209afc28b5ffa432e To include surface tension effects on the free surface, the Poisson branches are modified and the Laplace pressure jump applied at the interface. ] hash: 0000012076-eb71bac50e9983067c1e5d7a0f85dfe2af778ba8f8dd4b0e799d08ccb78b96c6 [More free surface lcmalan@gmail.com**20140821114615 Ignore-this: 649c985877bdd68c8ecd18037fa0a9fa Simple mass conservation correction changed to use new velocity masks ] hash: 0000011544-a4b4ae634284116a7235f772c07ef036e840fc28a13790defccd2490447d1765 [Free surface first order velocity extrapolation lcmalan@gmail.com**20140821122224 Ignore-this: 2426dacefa605140f6e1320a5d57cf1a Extrapolates velocity using averages of liquid or extrapolated neighbours ] hash: 0000002248-a8204bb6b8215653dc7833cfc73bab2225af52e093a11a8f98032ca07ff0c7db [minor lcmalan@gmail.com**20140821123913 Ignore-this: feb4a404691f218869f41d00645bf771 ] hash: 0000000630-12e98c9dd48ba95d62c011d3f10868d5d9cc4ff369761531a256d5f3775f138c [Tomas' authorship and GPL licence corrections Stephane Zaleski **20140821150429 Ignore-this: b1379e4fb850ba2e2c5fdea068910179 ] hash: 0000002223-59690f66cd816306d2681b6dee55b0cf3fb3bb23ea6f5e3d099443ce70728cf9 [added minor comments to surface tension Stephane Zaleski **20140821173842 Ignore-this: af2797183acd11ee180babe1ed05d781 ] hash: 0000000639-3d9ab7cb21ed9454a115ce7d9299d32f1aac21c06df93746d629b9b3a6f70c63 [cpu display in Curvature test Stephane Zaleski **20140821214425 Ignore-this: 19655ec1d1e8664aa06673946db04ea5 ] hash: 0000000499-f096e1a75eb9477c1ad860f311283b04319c9e59e3505eb23438d9a89ad4d95c [added get_vof_phase function to compute the majority phase. Stephane Zaleski **20140824140545 Ignore-this: 5f8b524db534fd525bbe7ab7c12c706c ] hash: 0000001380-7a94963dd7ad9e1445c447ec4fae8b7fc8017780104b1712d66e895f53dc56b3 [partially update author and licence informartion Stephane Zaleski **20140824142524 Ignore-this: ec0f8a22f06cc914bff8afe402e73dc0 ] hash: 0000005577-53f3e1f60540777685ed467305659b2755d5f775265a43c90160aca21dac25af [minor vofmodules.f90 lcmalan@gmail.com**20140825095112 Ignore-this: caa4ca7c0dfc55b44eeb1fc9f51ebc9a ] hash: 0000002972-fefd75a4c6088781607251973f9fe3fd512e769365a020563af25b5dc2a394ae [removed unused out of bounds line in subroutine get_velocity_from_momentum Stephane Zaleski **20140825134307 Ignore-this: b080319394996c2952ef4b2c643329ea ] hash: 0000000652-74dbd7784edecaf83bc53534db13645d5eaf3840ac55d013f666330c804a8a50 [corrected a bug in error handling routines (wrong MPI_abort call) Stephane Zaleski **20140825160105 Ignore-this: 31476c15364012e9695720d198f07f15 ] hash: 0000000806-0ca462b0b9a10fd98edb2958307415cf3a7262b2c3fc20166d95852359be71a6 [added tag_threshold Stephane Zaleski **20140825161136 Ignore-this: 1a3e566f356f6f08d4a44992813bbb10 ] hash: 0000000736-e51dea05ac510bb0c2bc1bd4ade39fd649bd687018210a58738121e6602c9319 [previous patch did not compile Stephane Zaleski **20140825203026 Ignore-this: 6640cfa059737095e6fad6ac5b0e2531 ] hash: 0000001184-f925b5cdd55f67e698bf6c56b9ca77fd261b4cb2e05717ee9e2707a77e1df365 [missing CreateTag2DropTable call added Stephane Zaleski **20140826070524 Ignore-this: c6acc085e56050a710ef9bf27e0110f4 ] hash: 0000000347-f88b2fbcf1f816cfd88b46019f08692920e11cf74d7194a3397cb2818d351c13 [free surface array bounds lcmalan@gmail.com**20140825144739 Ignore-this: 467962e3af7bc1479755561320875e54 ] hash: 0000000494-68ab4e86af3fa7b9f63a02fcce3d4cf372b33b2509361b239ca42a20cfc67826 [get_vof_phase order of calls corrected lcmalan@gmail.com**20140826090928 Ignore-this: f728dd29a2b7cd22a7c33275a1d9791a ] hash: 0000000895-f1721ddf5cad3affbe94941508e1826b9895f5eb613bf4171a50223b847c6a64 [minor set_topology lcmalan@gmail.com**20140827085245 Ignore-this: 52f460c090c6497f819c8252f134804d ] hash: 0000000897-0df75cf4d93f4b2646a3fbcbd490c233dad0ec338a15379d710d324cfc3c7dcc [Kappa NaN test lcmalan@gmail.com**20140828094843 Ignore-this: 7f7c58cde670fc85420bb0266fbc9216 ] hash: 0000000409-f65b9e13bf491402d676c31b13388f45c60548b9dfa4a2fb726139237a38edd8 [removed unused variables in modules and vofmodules Stephane Zaleski **20140829133129 Ignore-this: f36704cdd7449b490817b50b19cc6b86 ] hash: 0000002196-17ca344d13ecc72d12aeaa69441fcc4b96e65e42983047125132498ee8cea220 [removed some lint in st_testing Stephane Zaleski **20140829160337 Ignore-this: ace2523c311c392354696644c82ba91a ] hash: 0000008266-12de55d44eb916a0fd9ec02d311f1e443c87d19a125c003228e89793fdb592b3 [Removed the averages module and fixed some more warnings in vofmodules Stephane Zaleski **20140829164222 Ignore-this: 9293c3928c65a557a45b0b1ebeeb85d8 ] hash: 0000023336-8cf278d62ab2f862817aa6e4b72353e2062fdc417b7e766570733aec9b1ea126 [free surface code latest lcmalan@gmail.com**20140828163951 Ignore-this: e607f835ada7639bb9ee29114f28768b ] hash: 0000034407-667908840744808f726bace7233e87ebfeea3290d16209bd76abf61ed1029f6f [uncomment extrapolation, comment mass conservation lcmalan@gmail.com**20140828165404 Ignore-this: 36b3782323f695838d33b18de340fb5a ] hash: 0000007683-782d03cf520bdb084b97da7409c7e8bcc33afbd05f522808f3addc6a29eb286a [minor, switched debug off in freesurface lcmalan@gmail.com**20140828170245 Ignore-this: 7b1fbc8f7aeb2d23c0904e3e075b081 ] hash: 0000000186-d7cfe7ec6697194412b34415f4ba8e76e8a6b599e202af4a3cea0d26656a5f8d [free surface extrapolation improvements lcmalan@gmail.com**20140829170922 Ignore-this: 3d0c9030f4f5be5abd693e493611f3dd ] hash: 0000010120-c42c7ada839e0570b53e37fd3273c15f05f30f0244abdd1af56a67b3a6667a26 [removed some warnings in newsolver. Stephane Zaleski **20140829165434 Ignore-this: dc4ae60aa13f38f14bb90c660f60c326 ] hash: 0000001118-2a6d5439187f4e58a7d635930c487a29046516e7dc2e5c881e2164db06b14d68 [temporary revert to old Centroid finding routine to avoid division by zero. Stephane Zaleski **20140829221007 Ignore-this: 410a0951952fbe91bcad7916de6ee84d ] hash: 0000006716-6463b3106ab92d092e4b363fec81359b35f2082cf4946f2a6e6b451c0585e712 [Changes how difficult parabola fit are managed. Avoids some NaNs. Stephane Zaleski **20140830001823 Ignore-this: f364bc755d93decfbe66bf447d6201d6 ] hash: 0000002708-d9cfb72df250aa5783252b8c0cb4adc66768ace1fde50e9c191d7c7dfc22c7ee [eliminates a division by zero in the write_vec_gnuplot subroutine of modules.f90 Stephane Zaleski **20140830132552 Ignore-this: 4cd12e428797d8ad8c9de129a929944f ] hash: 0000000275-0add12467df23cd073650ab9466cdee975cacf66bb59f1b55bd196ac2a7c75a6 [momentum conserving: I use now the most dissipative version Daniel Fuster **20140901102845 Ignore-this: 36e3fa2459ccd875499ae8a9384501ac ] hash: 0000003433-c7f6b1a5a39ab9c107cb114c16fa7ae3f8550daeaad1951ad03738c7e0755e18 [added a first-order upwind scheme. Stephane Zaleski **20140901150549 Ignore-this: b64396fc6a38b59583177557b53dfdce ] hash: 0000005059-3d22cbdc3e7028c524eaef3a06bea27882b8f763f13a320b78f7e629fb560fb6 [momentum adv magnitude output for gnuplot lcmalan@gmail.com**20140901141219 Ignore-this: 24369097fc8afc0dc5d2ad55fb630ce9 ] hash: 0000005716-266dae837c2294b38876bead2813eb8d8ff849b1d71202bb1b35bd872588a225 [capillary wave test initialisation using wave2ls lcmalan@gmail.com**20140901152421 Ignore-this: a548a3ee1fc7b77564f0d1cb971eb9d0 ] hash: 0000000646-eff09de917648efaf8c62fa1dc5183f401dda19c5556c2a56875c061f062780d [new staggered momentum advection method Daniel Fuster **20140904163643 Ignore-this: d8412b081ae337076361a2b129b78291 ] hash: 0000015226-4b08aacbc11d9591d55770c47d2d0498628248d4995f00fda00242188502b548 [bug fix in new staggered momentum conserving method Daniel Fuster **20140904171411 Ignore-this: ba8783981b23d52cc9c2b830ac2c0203 ] hash: 0000000501-e4f4cb7f553a9b00755901186d5b5697a0a84daa9a1cdaebfaf2b01e6a8a4567 [Added logical ghost layer operations for assigned flags in free surface topology lcmalan@gmail.com**20140904094150 Ignore-this: 7686cd4e8e2743ee7c7b550df9407a1c ] hash: 0000017185-5e98f27542ecf2d35e8eb98dbc0aad6c478dbabaf539375f91cf38c860845b64 [Free surface topology assignment bug lcmalan@gmail.com**20140905131948 Ignore-this: 1defb5d988fcf9246b45f3b4939ba2f8 This patch contains a bug to be fixed in the topology assignment step for free surface extrapolation. It does not seem to affect othe parts of the code. ] hash: 0000012540-40e9f56d75cc5960734a48a6a630525c03a3b5eb54c0562cd12cc6c9289f81b6 [bug fixes in momentum conserving + cleanning code Daniel Fuster **20140906162838 Ignore-this: de0eacf24c8c5f94053be498e86273e5 ] hash: 0000028017-0045448804975741e96606c0d1333b839893b139dd7ea083bee75f8a6e9800ab [changed the name of momentum conserving scheme to MomCons Stephane Zaleski **20140907185838 Ignore-this: d568c7876a842ffab9b96614b28fe16a ] hash: 0000005657-bb6ddceea58b4fa08af2121c08e7a1367ef9b79d18393bb3c87987fc20545576 [added missing file reference-MomCons.txt Stephane Zaleski **20140908072333 Ignore-this: ab687bd0631312fba62e8f60ff28a586 ] hash: 0000003271-c7cdfe06fda069fa75a39304c58aaa0f6f073b0366ac399a6f0c723d2e53931d [Integer description of topology level for velocity extrapolation lcmalan@gmail.com**20140908080438 Ignore-this: 276531bad2a463e39ad1aca0ff9496b8 ] hash: 0000016091-cabd4cea0e44712e548a26cdf2b4e816a6439ace4eb68e74907a4113cd17b7dd [Fixed parallelisation bug for free surface in setuppoisson_fs lcmalan@gmail.com**20140908171657 Ignore-this: bb56ae8911d75f39487c2e962cc0bda5 ] hash: 0000002344-822b755489b3033f5fea2a46bb9696438f85351f2b21fdc95c9c248588066fc7 [Removed logical assigned flag for free surface lcmalan@gmail.com**20140908175729 Ignore-this: 6d3b318ec82dfe075f3bba8a673d1846 Unassigned velocity masks will have an integer value of 3, the value to which all masks are initialized ] hash: 0000007243-b603fbb3821582785ed63b9acd8cd98e454d0bd94136ddc0ef760f5cb4b7d2e7 [Removed unnecessary MPI ghost layer operations in free surface velocity extrapolation lcmalan@gmail.com**20140909081111 Ignore-this: cf97e7eef4e5ecff69a583b5a660523f ] hash: 0000003168-c2a3912475252828f0caaadd3e46c86e146e0062965470f1ebe96001f05a6b8c [Ghost layer added for global normals. Required for asymmetric Poisson branches in parallel. lcmalan@gmail.com**20140910142606 Ignore-this: d0291a61c166be93087412fcc2e2eaca ] hash: 0000000633-0c312b637aa13d7e619e2ebd9e5068b2e95b3007ac4d9c8b1c8b42143d6543f5 [Free surface: modification of asymmetric branch calculation, additional P_g available in parallel. lcmalan@gmail.com**20140911123650 Ignore-this: ef935af8c0474432c3b07d7bae799742 ] hash: 0000022103-51976aa387e28df42d938ca19540a4e51c2ecc7adb01d6a97275520523cbad48 [minor FS lcmalan@gmail.com**20140911124052 Ignore-this: c5d3a4280eb889aaa537a1592409d897 ] hash: 0000000146-c956d17268ce6bc672f51e45bd42f27bdb1d705029dda2cd4e20ea845ab6efed [new version of vof_functions to deal with some special cases. Stephane Zaleski **20140915123319 Ignore-this: 594b4e1c736714fc615fdadafd4656ed ] hash: 0000001412-70fb00b9a34b321df3816e9727ffdf93f47b861e3aca0824b93b44dee5bb5739 [minor FS lcmalan@gmail.com**20140912083342 Ignore-this: f97d3c801154a7b423ea26014422198b ] hash: 0000004965-effb2b3303c44cf21e3e69278e391d13c737e6a6ae02b65a75cd09105b05df4d [Free surface: removed cavity cells from pressure Poisson calc. Added topological mask for pressure for later mass conservation step. lcmalan@gmail.com**20140915132724 Ignore-this: 20e211405a9402acc55524af16b72e79 ] hash: 0000012313-a529046ff854d6ef54a02d1970fba74a2c3b42e6cc9107db2df838464c7a9c97 [Minor FS code cleanup lcmalan@gmail.com**20140915152407 Ignore-this: 5f818effee9b2d58173f38f10d07a052 ] hash: 0000006835-50f35c9e501f019fa17e36c3dd2856832572d646ca0799a5bd7fed89a3475fd0 [Free surface 2nd projection to ensure divergence free velocity field for vof advection lcmalan@gmail.com**20140918110920 Ignore-this: 7a6bd06c795b3dc586934a7f1df077af ] hash: 0000026212-384b714660a76f45a6fa0d4ab2ca6c5f6cd7d465409f2a50c4912008ec745e18 [Free surface setuppoisson_fs fix lcmalan@gmail.com**20140923130746 Ignore-this: 830de936cee6af9007febf416e492d28 ] hash: 0000015736-6496ccfdac2c742f025439f262b8612ab257f420752563d77ec8e73e74e3a315 [Free surface modified branches for second projection lcmalan@gmail.com**20140923142514 Ignore-this: e6a70e8b687fc98bed4990ae19b7cbb7 ] hash: 0000002468-c5152bf3ec3c8ed8fefd3c9d24ca9037cf0ec4ecc65decb107e7fa1a0267d3bf [minor FS lcmalan@gmail.com**20140923151743 Ignore-this: 9164cbe65d337d4d0613ea7e490f432d ] hash: 0000000995-fb1cd4c59ac9d232244122f5867d192cf1a3296bfe834378b3f57d99c4643a8a [minor FS lcmalan@gmail.com**20140923165405 Ignore-this: 3363ab711d039b64bde6b34cf93e5b5e ] hash: 0000000366-5d8d967189b00a4e3848bcaee3cc7acfa38e47f3a48287be08b9438d5b611ff1 [added inviscid capillary wave test framework lcmalan@gmail.com**20140929131351 Ignore-this: bfccd157e1a32b0b60c3c00cdfae0b35 ] hash: 0000020414-3b6900f1ed0e1b5b14b37caecf9f3851d6379fc49c32ebf6818c5ff69f3736b0 [FreeSurface divergence norm mod lcmalan@gmail.com**20140929165054 Ignore-this: cf4bcfa9fac84344f2b9c58b5a3fb78f ] hash: 0000001333-60bfbee8dc8c45ee56254fd141f11510e2051fc71bd7d8609bc752e5dab97a82 [improve_particle_module_output_and_set-up_Phase_inversion.txt ling.stanley@gmail.com**20140903141140 Ignore-this: ac7420b4c8595405e0b778fa05e6bbc4 ] hash: 0000029799-3e68366ad96a4092a4eb6236a88d92ba77974bfe0d8dccbb43a0cae13a8c763a [fix-bugs-surface-tension-and-particle.txt ling.stanley@gmail.com**20140908203409 Ignore-this: adc6e19abec8636f19bb47281709959e ] hash: 0000002415-b155c3c92f2c328b61c30eaf2b841dcb92bfc883704abc17fb6b7bbd3f38dd2a [fix-bug-shear-BC-and-solid-nozzle.txt ling.stanley@gmail.com**20141001132215 Ignore-this: c3a9d56ae26b038a13acf462a401ec81 ] hash: 0000004709-0136a1b9b1eb558efc70f8daead4a00c714c91663ce1a2da502d27114efa4c0d [Free Surface latest developments lcmalan@gmail.com**20141005114632 Ignore-this: 24a3a5c1c5bcb5cd7ced5db446e15aeb Implemented different ghost pressure variables for each coord direction. Replaced use of old VOF functions by new functions of Prof. Scardovelli. Implemented a staggered VOF fraction approach to calculate the interface positions. This is used for the assymetric Poisson branches. ] hash: 0000039957-613ac11d9189bd532b4521a54d6218727f61220a6b22df27f670b770ac07ee70 [Free Surface branch limit non-dimensionalised & second projection improvement. lcmalan@gmail.com**20141007152131 Ignore-this: 37475229121065d7866fcdd2c8df3454 ] hash: 0000012752-15da6698df7f78bfcac331d678aee4f8f2ce2f74d4383e190c4490ff82b86ef1 [A mistake was made in the patch "fix-bugs-surface-tension-and-particle.txt" on Sep 8 2014. This patch is to correct it back. ling.stanley@gmail.com**20141008044521 Ignore-this: f9861c9f50d4b7dff449b6449ba53818 surface-tension-bug-fix.txt ] hash: 0000001072-600579897a589a14c8873e180153509a00954b8668e587a4f21acbb9fc27241a [Free Surface separate Poisson solver lcmalan@gmail.com**20141022134127 Ignore-this: 84897609dc2c7d4591dcfffe857fd2e0 The Newsolver is copied to freesurface.f90 and called FreeSolver to remove all logical tests and flags for free surfaces from it. ] hash: 0000015801-b15b83f8d4e2f79d537abfcc4767ad596356c987571bb6e25f1d0fd441d535b6 [FreeSurface corrections improvements and debugging lcmalan@gmail.com**20141022135452 Ignore-this: b677f9ac77b6fe1295f42cac912c7487 ] hash: 0000007710-2e00cb6fd531c23cda853a160cac749bccad73c0a8a55768c5bc54eef3d6b075 [added weights to least square parabola fit of centroids. Stephane Zaleski **20141031233437 Ignore-this: 1085a8f52301dab7f6d43e153e873fa8 ] hash: 0000063736-86a0ec79d09e74c23240860452431427f1414a8669bb6ca58bc6d5d1fbedf9bc [fill ghost layers with heights. Stephane Zaleski **20141031233752 Ignore-this: e41b248dd24306133ab121c3f035c03e ] hash: 0000001783-6975c690e08d4f3fbed35e425cb531b60365c7ed0305f1b9484e9828a25efc78 [bug in curvature test script Stephane Zaleski **20141102163001 Ignore-this: c1ddbfb567ce37749a98a0436860aa03 ] hash: 0000000446-b2ece2137ad6df85caa3854ae7242b38deffb6ce40eb240be99ac2e96a2901bb [begin of coding of coordinate rotation for curvature. Stephane Zaleski **20141102213607 Ignore-this: 14b17ae497e568b671d238bd0014a3df ] hash: 0000003744-796a2f70ce2218451b65120be61785ca0ac81048112029145ff1036e8bc08666 [corrects bug in the recontruction of the height function from partial heights accross parallel subdomains. Stephane Zaleski **20141104231034 Ignore-this: b7d055a2bcc4b5e4433a5fd365e71cab ] hash: 0000003908-9490613d28810bd5db2670e264e8f64732acc2cae84e083263583b45b380f429 [minor changes except for rotation in the curvature tests. Stephane Zaleski **20141107172705 Ignore-this: eefde6fcbd1911934a39cda5a06818dd ] hash: 0000001196-8a0d4237fa1eabf9d2796d1d6935c953edefafcf83e52dcb81085d1b47152b54 [Changed the #if defined() to #ifdef for compatibility with IBM's AIX XLFortran compiler Stephane Zaleski **20141109122854 Ignore-this: 4d206520d07fe90be67146a6cdeb49a8 ] hash: 0000000717-199e87ae27a5b9cd2f05236e0a95c472588de4e514d8d7d5ac1f04e31bb7cfbb [Free Surface Rayleigh-Plesset test framework and re-normalization fix lcmalan@gmail.com**20141113161419 Ignore-this: c030b8325c338da377828021215749ca A polytropic gas law is implemented in order to compare PARIS using a free surface with Rayleigh-Plesset. A long-run test will be added to the repository in the near future. ] hash: 0000022460-ff79fbfac93322722e4123f52746bcea4a3097ee82e46303f0e317a364134924 [Implements and tests rotation in curvature computation. Stephane Zaleski **20141115102807 Ignore-this: 8f34810fe7883428730aba78891a0361 ] hash: 0000027884-31e1b3eb2f3fc212dbb6e3ff40fa1fad26ed1fdd0871d89dea71529fbee7f60d [testing the rotation (still does not work) Stephane Zaleski **20141115120129 Ignore-this: 3b38bf752011751f0f93b366ba137bc9 ] hash: 0000000437-5383118d02e7d9ae265d79ac434140190d09a41d8de69e433638ebab002c2e47 [removes conflict with previous patch from Leon. Fixes minor issues with ST testing. Stephane Zaleski **20141119144214 Ignore-this: 7b3cb2acb661eb646ea11d835b4cb264 ] hash: 0000003005-d3497cdb262a24b16b63aabc6772181280a5b8984f6461fa8a45a96612e75a3a [Free surface input file and other Rayleigh Plesset additions lcmalan@gmail.com**20141119171843 Ignore-this: c57ec38b40dc5ccc4061563c451e5c4d All Free surface input parameters are supplied in a separate parameter file, called "inputFS". ] hash: 0000007971-a619c8184b36c64c18a046b10d85d7c8b077fbfdee9539a97fd4c07e8c482a78 [Free surface Expanding Cavity test correction with new inputFS parameter file lcmalan@gmail.com**20141119172537 Ignore-this: 7399b5dab31eebb7bcd4c986b4e5553d ] hash: 0000000470-b7720e9239b1d6e7ec738c42811f06c02d2b18aab3c4b25798c8c6172e51c126 [minor lcmalan@gmail.com**20141119173941 Ignore-this: 7383185ad6193c4f125e4ceacb2e74bd ] hash: 0000000223-b1667ec0f54a79d6d8996a4f6e581a66ea9756cbe816a7b9c8a3a8eefd5f8c21 [Improvements in KHI2D test tomas.arrufat@gmail.com**20141120165344 Ignore-this: 644c6ebc5a127482a248835ef055ec66 ] hash: 0000008536-f1be1dd84573e559dcf2c08517feae9aac6c359648d51ec0edcb899f85297477 [Free Surface flagged output and density calc corrections lcmalan@gmail.com**20141121081032 Ignore-this: 3d64ebde9aa7a72c2b8bc356a6bde218 ] hash: 0000022112-57fa20ee2f89937dfe95f28f21dba30beefb5b0f4535f283694c1b09dc461001 [minor changes Stephane Zaleski **20141119162203 Ignore-this: 1864c01d7e623ad8d98590db616f2af ] hash: 0000000326-1258dfe360cf871a453a4e3070f5f922c48c9dfc1de2069c3d5745833d374e8e [minor changes to curvature testing Stephane Zaleski **20141119195041 Ignore-this: 9bbfc87a1c6ab2ef604ac56bee8da88f ] hash: 0000001416-3b9e0d74914f7e1f18340d405c826f76c27752466a759ad4823bb8b978e21bef [minor changes to curvature calculation. Stephane Zaleski **20141120143710 Ignore-this: cb486306368821194feec29026ae30e4 ] hash: 0000003590-0595e01ca951f46f137e288638fcd10bb42e868016b607eccf63b32cf790162f [minor corrections Stephane Zaleski **20141121130847 Ignore-this: 574326d6181b85fe257a05856a1f1633 ] hash: 0000002914-b4807e690f05ae38a4ec318c0713cd33c017263d1d20b6f38d08869d7d2343be [Small fix tomas.arrufat@gmail.com**20141121131519 Ignore-this: d906bf0cf62e55cc9b0c9cb4031413da ] hash: 0000000171-f69f93dc297f888c842cf85ad15e346f86809801230dd4090625eb286555ce44 [superminor Stephane Zaleski **20141121140147 Ignore-this: 574d272a534205edcf77d67f18c4bf3 ] hash: 0000000174-24093a2cb2686f83509696635548dd5e4b34a89d0b10e08474c06ba8b59af597 [reverted to previous curvature computation Stephane Zaleski **20141121144446 Ignore-this: 73ec0a6f7a3546032ec0193648033347 ] hash: 0000000457-9b5869ef26692634a03478072058b19efc2c9adeebbeb5ad28681f73c8f057a7 [ExpandingCavity test case inputFS file lcmalan@gmail.com**20141121114443 Ignore-this: 7e32f80bd67fb67d3a647ade924e9c53 This is a patch to update the inputFS file in the EC test case. It can be used as a reference for free surface requirements. ] hash: 0000000861-09c7e3d440a4eb2ded535f49fbc29f0d033bf89502520e1fcbb9c48504c9e2e0 [FS output fix for VTK lcmalan@gmail.com**20141121175042 Ignore-this: 9b04ed41252d4c13995f970069866da4 ] hash: 0000001937-9f52d6633e5a79670a11a4b3a063dcce0a7997da89818f6d93a988dea97ce23c [New output_type==4 for velocity and VOF in a single VTK file tomas.arrufat@gmail.com**20141123212705 Ignore-this: 5f257dc9e1815652cab0ad1188f7ec74 With output_type==4 it is possible to obtain the velicity and VOF function in a single VTK file to perform more rich visualizations. ] hash: 0000003088-3a63829c0d384969b6ad7ced4eb511b0ec20ab27eb8cd0c1aff026d09e6b6d1f [Syntax correction for Babbage2 tomas.arrufat@gmail.com**20141124133230 Ignore-this: cbf26917f9f36c6cf1cc8ce935fb4ffd ] hash: 0000000867-02c786130d755424401bf258290654d269879e63c24e429bfd39ba58712cbc54 [Free surface output, correction in visit file names lcmalan@gmail.com**20141125131351 Ignore-this: af27e94df37ef0b79da7d8b1836f8546 ] hash: 0000000959-584621031e3df28c3af440a431ecfccda4d233c6592c34f5cecadda30c875f40 [still working on curvature Stephane Zaleski **20141125133528 Ignore-this: 4dd4058398b3d137e93e44861ca02783 ] hash: 0000022064-6553d75c03cf8985efd8ac420551f41ce2cfe88ca77480a57cea6e7e988c0c6c [Free surface order of curvature and height calls corrected lcmalan@gmail.com**20141125174649 Ignore-this: 6fa5238c120252a092fc12902b9f381b ] hash: 0000000672-b2dd6c517280bdffdf6377885e97d8f4a538eb728c840e533aa330fea07dccb1 [Corrections in the KH test and in the coaxial jet initialization. (In previous version the flow was injected inside the solid) tomas.arrufat@gmail.com**20141126154743 Ignore-this: d2e524c89fc4b8deb8381a71b09aae58 ] hash: 0000004338-c46e5d3eec01e3d83a709a87a255235f198023a258556b47bc18da43a4291cbb [corrects an error that blocked the mixed heights curvature method. Droplet test smooth again. Stephane Zaleski **20141126182657 Ignore-this: d6a94b923203b620a32c3ab10956b240 This is still a patch in the middle of a search for a better curvature method. The Droplet test case is smoother again, but the curvature errors when using mixed heights are inexplicably large. ] hash: 0000005334-f68c7e2254e813d17803519f4ef832f55173ef4e451b0d8796d6692159b666ed [remove letsdebug lines in surface_tension.f90 Stephane Zaleski **20141127015259 Ignore-this: 948032eef7a11cc4138f22b332c380d5 ] hash: 0000002195-bdca655a61776e0952d9ab85a34efdcbd9ba295a12ecc6ae15910df074e2fefd [replace the declaration of letsdebug that was removed in surface_tension.f90 Stephane Zaleski **20141127021756 Ignore-this: 79b0d4e9994d56322774c4c20270a4d6 ] hash: 0000000242-8ef05ca0e0f63151a2f4202b43b06535bb5210c7e77bbcdf2d3658b5cdf26f31 [in the middle of ironing out curvature with rotation. Stephane Zaleski **20141127085137 Ignore-this: 30c7758f6737b8b4a13768243b59d96f ] hash: 0000004522-718d9830d39f93438c615e45630e3e9b9da5d3059c29a9d9801429846c39b8db [Initial perturbation in KH now relative to wavelength and not to box size. tomas.arrufat@gmail.com**20141127124606 Ignore-this: 2f75f446e6d88312a90d6f041035c5dc ] hash: 0000001063-43800b8dadab3d041edea261107053ce1357f3817ac4900eea3e85285303b477 [Free Surface RP test RK integration done in PARIS lcmalan@gmail.com**20141127184601 Ignore-this: fbf32026b44e5bb2e927f7b70d6108ab An integration of the RP equation is done using a 5th order Runge-Kutta solver, using exactly the same time step as PARIS. ] hash: 0000005697-bd196e46f01506aed7e6870b29e7c7f3104f002e0e8338fe98a34f1b6195322a [h_of_KHI2D subroutine moved to st_testing.f90 tomas.arrufat@gmail.com**20141128092903 Ignore-this: 66626063977921cd3d81d1760d40cb55 ] hash: 0000007943-fbb16dadc0a796353a27f660a92835e2f067b10fa9dad3449cee7d55a98bbe86 [Previous push correcter error tomas.arrufat@gmail.com**20141128094938 Ignore-this: 8a6b21e9d3f5c45456afdc52158e3500 ] hash: 0000000661-bead2c38ee35e85fd3d7fecc0eedea805e62d200289664e5d18bfe719f351159 [Free surface correction to RP integration lcmalan@gmail.com**20141128125947 Ignore-this: 4e6bc82679044b2583634cefea187756 ] hash: 0000000860-eb78212ace7a754bf2987c685a8454eb4beb2eba56ec2ded318f5ef443ee596a [More FreeSurface RP test improvements lcmalan@gmail.com**20141201143540 Ignore-this: 92c2e86912848a758bfca0c42edbe83b ] hash: 0000012061-c38110070e8276844e8dd7b26002c173507caf69d12d2a0999e185a7eb87cef3 [Free surface clean-up, overall divergence testing lcmalan@gmail.com**20141201191619 Ignore-this: a1d0c23c7dbe883ddda8869b9c81f288 ] hash: 0000007628-901c4e177406faec64cf5923df1fd61f3ace6edc3abeee1e04dd873b97fffb72 [Free Surface Poisson setup moved to freesurface.f90 lcmalan@gmail.com**20141202125500 Ignore-this: 2fe13cd078ba06d94cdfdef57a4f965a This saves lots of unnecessary variable transfer to the standard SetupPoisson ] hash: 0000016030-d3f5507899984e3e43fef8acaf577439b034c3758de7a4833eb12c6200020a0e [FS minor lcmalan@gmail.com**20141202172800 Ignore-this: 111fb4b7b8c365a09678c2fc57b185c ] hash: 0000007041-0d78a7d8dee4e57184a9efcceb400b63fbb836bec79f8f206f968a1d7805bc44 [Improved comments in the complicated Heights pass 1 + minor changes in the Expanding Cavity test Stephane Zaleski **20141203112901 Ignore-this: 43efc088ffdbe1c3f642dd3129f38e0c ] hash: 0000003731-5cc5d10f577ffbeba2b5fd7600351e6cf9ea9ed1dd3428a2d393159a0b09005c [more cosmetic changes Stephane Zaleski **20141203145158 Ignore-this: 2397e61410b2b5861e7c62e402f2ad0 ] hash: 0000006035-0b2eba03d9825fcdddac998fa670c43d1b327263138611f3e4f50920adce70a0 [Free surface RP test improvements lcmalan@gmail.com**20141203124642 Ignore-this: b4733a51eea5c146fb7a59e1cfcbfb37 ] hash: 0000001330-a402d54a5d099341eafb173ac7052f954dfdfe24612896bed34058d4c4dca9bd [Free surface RP test par bug fix for RK integration lcmalan@gmail.com**20141203173836 Ignore-this: 58866b44e9d0fe543a3008c155b11798 ] hash: 0000000866-a9978ecd3e648b570c153a90ea87419056b36a933d89d51b6a0d6de9e0979096 [Various (general) syntax fixes to run PARIS in supercomputers (w Tomas Arrufat) Daniel Fuster **20141203152311 Ignore-this: 420268b00cdb4bc9d0a7307f8dda4593 ] hash: 0000005078-4b27e0a7417625768148816b7ab3fd03778db974903bb6787293b815611eea4a [format fix Daniel Fuster **20141203173958 Ignore-this: 4e3ad393ed813309f5d7038488d5600c ] hash: 0000000313-ac82ac77d13bf4443f952f785b0644d90e58b108e5c8512ed1fc06dc7f01d161 [Convergence improvements in Jet tests type 3 and 4. tomas.arrufat@gmail.com**20141204090802 Ignore-this: 6d9ca6837af6e5048e0765965fc0d146 ] hash: 0000001623-b805bc98ed99edc5a4e2a74ddfae41cb57b8c58173ae49131052916c612539a9 [fixes a bug in Heights parallel communications Stephane Zaleski **20141205080337 Ignore-this: a1fe9c86189c05408829cf706475dbb0 ] hash: 0000001433-a7aaa8cb0914404d02ad6ed698d903693c1f8e403b0ee6e2e6cd4ced28e35863 [Added Heights visualization in output4. Tags also added to choose the output fields (output_fields) in 'input' file. tomas.arrufat@gmail.com**20141208134836 Ignore-this: e0261311c06ffcc74eb6168cfa451185 ] hash: 0000007228-f415ac094e5f3e23f608180f8fc41878dae4db7560939229765285f3a086fc97 [extended the height test to catch errors in both "above" and "below" subdomains near the boundary. Stephane Zaleski **20141213101803 Ignore-this: 30981eab52e5e535532fa18432c760f2 ] hash: 0000004860-8e06a9493e77f9baf7d0ba257e530d9ba193081ce8a11c21abb4aacd4d256695 [added the 0NOTES.txt file that describes informally the grid Stephane Zaleski **20141217172607 Ignore-this: d0f682254918006212803c77df6327f2 ] hash: 0000004856-64ec213c2c5f25b8a94aac63d068dab5a04646c15ea23bf039dc4c1ed9b3b3ca [Free surface smarter pressure jump calculation lcmalan@gmail.com**20141216111209 Ignore-this: ffb56449ab2c37cf1eb52102f6951bb7 ] hash: 0000002697-69f190ceb7328b808ea629bf02780d7226cb292e704e96730773dc772f8537b8 [Moved velocity_extrapolation to freesurface.f90 lcmalan@gmail.com**20141218134441 Ignore-this: ff726a419826805c1abe070361c8c626 ] hash: 0000003774-830ee26bacaad6c5d2160342a5944f7e1c89ae6226467f473abf68d255597d86 [Adding Silo Output tomas.arrufat@gmail.com**20141220135508 Ignore-this: 42773387a12dca16cb4431f3b8c84c02 ] hash: 0000010124-12e7d610f5f53665f93a815d3b1a6412bb79eaba554d0a3a37725d7e3726baee [More changes for output silo tomas.arrufat@gmail.com**20141220160324 Ignore-this: ec11515b098d4addeea8688fdc921834 ] hash: 0000004119-cdf5ff08875aa3761689ee78549f94a8e88edcd1c7c29e110892098e96ee7126 [Small fix for silo output tomas.arrufat@gmail.com**20141220160710 Ignore-this: b704bda110f2051be1fafb79bed6f2b8 ] hash: 0000000269-b9eab364d6efc3759bba777142c1e247d913b2f4f9ce93fc95c21c27ecdf224b [Added parallelism test for free surfaces lcmalan@gmail.com**20141223151029 Ignore-this: cd866ed7c75b76a93ec05127610f3346 The test is a global parallelism test for all aspects in free surfaces. It compares the first 100 time steps of a serial simulation of a shrinking bubble to different parallel simulations of the same bubble. ] hash: 0000000361-40dbd5e02181d9256e41407925e19ab240500ffb8c1e4b5ff84364cfa606927e [Added files to FS_par_test lcmalan@gmail.com**20141223163710 Ignore-this: 94cfbc9a5ea6565f50693965c899e62 ] hash: 0000007842-356f5fed93aba9b6a6002f96577920092a75ddebd21a19482665e6ffc1c06a74 [removed obsolete files Stephane Zaleski **20141217172841 Ignore-this: ec3abc7a6e131c322660fef96e88afb6 ] hash: 0000009291-6a2e59d714fa840c19c81c05486376e994068736932a9e0f6645f33276697b95 [corrected bizarre velocity outflow condition. Stephane Zaleski **20141219072800 Ignore-this: 9fb2a2852d3c33908edaefedd18b0d61 ] hash: 0000000516-ce752f8108c77bac50def58ecdf157b01b50f95eff225550342cef251845c730 [updated author list and licence information. Stephane Zaleski **20141224131253 Ignore-this: bfed635fc955d141465c3d1cd25164f9 ] hash: 0000003694-a42a86d9b0dc39079ffaa8abf392134a9e1602588ba0b4570f8bbd80e287ae1c [updated NOTES file Stephane Zaleski **20141227180021 Ignore-this: 9744c1e7555ef34f564b340000c36caf ] hash: 0000007095-0a63cc5139dbe0cce9916486fa59065401823287a7a12a28490a9b3bbb86d08d [fixed tangent-to-boundary velocity BC for pressure-type BC 5 Stephane Zaleski **20141227210914 Ignore-this: 51ff2e5a11a567b630f8fbdb249b92c7 ] hash: 0000002577-e24523ab663e6ad832c6fea71e35b3c5b2f2e7c979ab1986974554ca4e7e3c70 [corrected Tomas' name in author list. Stephane Zaleski **20141227211514 Ignore-this: 24d5a99134e18355d822d65c06b5e168 ] hash: 0000000235-0fc60ad67bf09d198fb8dab2754d07a7543faed37f6444f19d40b8bcb8a68783 [Various fixes to boundary conditions in SetMomentumBC Stephane Zaleski **20141227222104 Ignore-this: fcc72e8488a593589111e3c60ad6667 ] hash: 0000002313-17b1fbd4b75d752bf24644cdf9c389217c808e88dfeeabff2882d48889ca0b48 [Added the uaverage and the 't' (floating-point time) variables to the momentum boundary conditions. Stephane Zaleski **20141227225200 Ignore-this: 73ce5782ea957312a068e27090d2be4b ] hash: 0000004617-1c20b50685490a8519237a0c69fa3b5793f3eed25315a50e8b849b27cfb4cda7 [small changes to NOTES file Stephane Zaleski **20141228120821 Ignore-this: 1f50319472969119ce2270f05ebe20fb ] hash: 0000000705-c83f31941baa08338edcbfe5e339cc2d322881a0540367c7af0dd6fac32e7e9c [adjustements to SILO library makefile option. Stephane Zaleski **20141229104416 Ignore-this: c08bd7dd6b52e2929b9b4fc01752358d ] hash: 0000000709-b5cca206706a69812e80dbda4990a92e314c833ab2f58243dae5ae0bcda19b69 [moved compare to pariscompare to avoid conflicts with ImageMagick's compare. Stephane Zaleski **20141229110222 Ignore-this: 9f16b2d83ef049516f89f77dc6ab9904 The "compare" executable compiled by ParisSimulator conflicts with "compare" from ImageMagick, so I renamed "compare" "pariscompare". ] hash: 0000004894-94cf2c61f231f3290d667bb79678b26846ad1c1c7f11cd39ca3e37d0906b44fd [corrected indentation in st_testing.f90 Stephane Zaleski **20141229113022 Ignore-this: 75faa0ed6fbffbc3157e560175ae3bfe ] hash: 0000055213-02910de4a72b51a62e1d1b6711b191c6751b334e002329c85d9519577e9940fc [Improvements to free surface global parallel test lcmalan@gmail.com**20150102094037 Ignore-this: ed45e45b999e76a74b8f0770079f79b7 ] hash: 0000000753-5c63d8a8c577270752118953cfffd70943358f34ed0b357b5708e5132eabae56 [Minor changes to curvature tests. Stephane Zaleski **20150102103325 Ignore-this: 13b2699fd6c9e9caf0c9bb3f70a84c96 ] hash: 0000001852-f8196a1629e9a01d78f00cdb487cc2b8173fe3d45837e06903f4925927c8c8ec [Moved pressure output, out_p, to output type 4 lcmalan@gmail.com**20150102163417 Ignore-this: ebb3c099c33ea889bd17fbcc4311cadd ] hash: 0000005525-66dbcfa32024f966a1530f7fcafbac959557e745bc617d20531ae3292f6a28bf [Removed out_p flags from tests lcmalan@gmail.com**20150102165702 Ignore-this: 366c9b16e699af4f4ea782ed1af15aca ] hash: 0000000223-f561b94356ba2efffd5eca516a9b3271c6853920fc6bc9f00a9109b1fcbda06b [minor modifications lcmalan@gmail.com**20150102171937 Ignore-this: c1320864b80bbc19d29b641dacc39696 ] hash: 0000000361-42154e1169050720944c96e1ca44dd3ae52d50efa7898cf58a2065aeb53b16f0 [Velocity field added to Silo output5 tomas.arrufat@gmail.com**20150103223329 Ignore-this: b444b4ff75aaa100dd215e00b0dd4690 ] hash: 0000002393-a9d057caa1991f39fb26aac26128c27504e065bccbf6bbc4868a4b75dc4f6245 [minor changes Stephane Zaleski **20150105172438 Ignore-this: 79c0b43e7528a098ff5c7cae6783887a ] hash: 0000001133-bdf7e61cfdffb816ece888694fb7fbc5783a7316fe2b3cd8a9c14b15b7ce48b3 [minor changes that remove bugs in the previous patch. Stephane Zaleski **20150105181244 Ignore-this: fb87c4d0d968959bebf0d0d572231377 ] hash: 0000001578-77cf8ec23d15c5ffb95de5999fd6e983cb3914c23080409880c0674743d3ee24 [bug fix in momentum BC Daniel Fuster **20150107164916 Ignore-this: 83c9bace8ccdb48f5851faf0fb8b8c1 ] hash: 0000000477-07bce9afd988ff4b8a4c6101a3890fe4a8c353a8f60cc92e4333a8c09e782392 [new cell centered momentum conserving method + interpolation Daniel Fuster **20150113141157 Ignore-this: 7b218f9496aec540b1ed0cdc58377e78 ] hash: 0000012639-d2e637af19b1e6b6885435eeb08bd58387b69b4d185772cd0be3e6c8cb628f80 [by default it is staggered momentum conserving Daniel Fuster **20150113141403 Ignore-this: a153869c5bff80a882c8ffa6c916e3fb ] hash: 0000000244-f7791c5bd77b0fa46a164f3680933e5292bd620e104968af19233e4845c780d4 [Free surface parallel debugging flag lcmalan@gmail.com**20150114172316 Ignore-this: ff7eed37a97b4ea990f4a4fdca5865e3 ] hash: 0000008735-1b6f00b3ffcfbee32fdc560e2bcbbdfb5488e4374006429f5ea750c7c9307d5a [Added pariscompare3D to util folder lcmalan@gmail.com**20150114172627 Ignore-this: 921b0ab2595d388947171fe3a56679d This is a tool to compare 3D data between seperate meshes, specifically between parallel and serial simulations. ] hash: 0000000575-f13e130a3738da6c50c9414bfe25f79d800df6c529a8381b629efbb11c4a8457 [Added c source code for pariscompare3D lcmalan@gmail.com**20150114172937 Ignore-this: 3d1fe52b66dc33fae33bc5f679a4ca68 ] hash: 0000005318-f9ed8675f58c0919b8b306413b8ed07a79487d65328936c2def4a8c931ff5f41 [resolve-all-conflicts-for-stanley-version.txt ling.stanley@gmail.com**20150120222912 Ignore-this: ee521ac739528a8fdd042075c152d7ab In this patch, all changes that are missed in my version have been added. The test suits are passed except a minor gnuplot error as follows. I will have a look at it later. --- running test in Speed ** (gnuplot:5422): WARNING **: Command line `dbus-launch --autolaunch=5957c8aed72aa0e76002bfec00000ee2 --binary-syntax --close-stderr' exited with non-zero exit status 1: Autolaunch error: X11 initialization failed.\n Failed to initialize wxWidgets. line 0: warning: Too many axis ticks requested (>1e+01) line 0: warning: Too many axis ticks requested (>1e+01) line 0: warning: Too many axis ticks requested (>6) number of procs, np variable 1 size= 1 cores= 1 Z/np= 447803 Z= 447803 --- ] hash: 0000043161-626f527d3fba2a9670a9e059dd072d727eca21ba27f68e9167686a562cf5f3f6 [Moved compare_4cols to main directory for consistency with pariscompare Stephane Zaleski **20150120222355 Ignore-this: 35c325e3283874f0fbff15cf3034cae3 ] hash: 0000000603-82d174f1a667246a5a9a04e54dad899e53d75ef66aee8ef5ea21f396dbf3537d [Added 27 boxes curvature test Stephane Zaleski **20150120224239 Ignore-this: 6a9d44b8fb85a13653cc69c8d4111abd ] hash: 0000013611-968fb2abbffece6691ff51fb5c662bd50ea4d58753c406c0d8c9eaec6d29e969 [special treatment for CGFontGetGlyph etc. issue on MacOS : remove pdf output from gnuplot in make test Stephane Zaleski **20150120224447 Ignore-this: 79b9897ae0486ee4c274dd8c9125426e ] hash: 0000001806-2a3d3b138679880db21e6f57a2b2af733c15b3029bba3746f26bad2104fcdb59 [minor changes, remove output_height from test_curvature. Stephane Zaleski **20150120224625 Ignore-this: 45781b8b8170341603783dd89041c6ef ] hash: 0000000804-92b720fb0bcf4c4bfc7413bd05f8bb3968e6943557aab12cbd6e06acb87fc787 [Momentum conserving is applied in a stencil larger than before Daniel Fuster **20150121154804 Ignore-this: 4f42ded1b04847c921c52477dd4028c2 ] hash: 0000001045-50074f32bbb7e9f678e2162cb5ef34406151301ebee5b3808ad4b122cce92e77 [momentum conserving is not applied in ghost layers (should be the same as before but it is consistent which what is done in other advection schemes) Daniel Fuster **20150121160710 Ignore-this: c4ea880b3c196f223f823aa3a905eb61 ] hash: 0000000673-944624b4eb0c6be2f136f84426eda2be639647958bca671dc8b8f7908b0d7b84 [TAG paris-0.5 Stephane Zaleski **20150121171254 Ignore-this: ae2114dbdd239240c6839a75d6ce6b68 ] hash: 0000027603-e85d02f5fcc183a68b373cec87bd4a46bcbc19a04dc2893778a404d28ee02844 [Softer time slope for inject_type 3 and 4 tomas.arrufat@gmail.com**20150122100829 Ignore-this: 567a2bf30985ba7228597d5064711179 ] hash: 0000000990-9f6d8ba10cb896458ee62aa4fb9123449768cbd7b669dacbd4df317479a8cce5 [Debugging: Added subroutine to write 3D point data lcmalan@gmail.com**20150122094941 Ignore-this: b447a838fdde74e8f2997ed6a7537d4d ] hash: 0000001940-cf7d23574b9863d49b76ca3ff929477e17ff486fb8f8cb792f9c79612a730ffc [Free surface debugging: clean up and interface pressure outputs lcmalan@gmail.com**20150122120933 Ignore-this: 80460b296b745ea57d8e3ace8c0121b7 ] hash: 0000008994-ed8376c84087ab268f2a59a31213b23c2ca0ec7c92dc0bad8e2af27ffab517ef [minor lcmalan@gmail.com**20150128055441 Ignore-this: b82b6041fe322fa19889a81f2e19d740 ] hash: 0000000371-b9fb949c090a04b70682482458d83d414fadb5461f180f8ec73f33c1adff9f90 [Free Surface: Removed extrapolate_velocities from surface_tension.f90 lcmalan@gmail.com**20150128083818 Ignore-this: 73f2d48024dc0ad1a3545724d095e553 ] hash: 0000003580-a1a38634ef9f8c341842e32341169f25021c9f2d907562a55dcb62a0f9c3bc8c [coming back to apply momentum conserving only in cells containing the interface Daniel Fuster **20150128130021 Ignore-this: 24f05fefb3982917c24d7249a4b86401 ] hash: 0000000379-6e3a7383362cc5e80f497a28cd86a5a269080bf9dddb924b0eb4b2c83eea5594 [Added Pressure output in SILO tomas.arrufat@gmail.com**20150130142044 Ignore-this: b6f8ab932e2afb1d3149859482320436 ] hash: 0000000825-c985f6e6e3d534d28eaa5392b74d9ce363966417ff039392d901d6c8ba9ff71e [Corrects error Droplet test gnuplot script Stephane Zaleski **20150131151716 Ignore-this: 7b41e16c7830db5b2a7d8eee6f99be26 ] hash: 0000000909-dfb612ee9953513f99c252e884baabf9036df9f77e0b64cc041b27665e85c1b1 [removed all unused variables from vofnonmodule.f90 Stephane Zaleski **20150131153109 Ignore-this: f9fff24ea6ed2fad5bc7c5d2c2b329b5 ] hash: 0000001105-4cb5cef365022d10e74e0fd687bb4417d5d01a9e64b4bf492b2a9aae7b8151cd [Free surface catch_divergence correction & other minor lcmalan@gmail.com**20150202060423 Ignore-this: 9c8e311b0810a9151912227a6ccf2259 ] hash: 0000001953-7285f4340c3c0321e614f7cff4d7a78fcfe9c743e70eaf54f7a4ed0d5c1acb04 [When VOF is activated the projection is done with the averaged density value in the staggered cells Daniel Fuster **20150130171103 Ignore-this: 5f1ed816d13e9dbda82e380aae917a9a ] hash: 0000014996-a610a06be50b280901bfa26439472a255adce1c844a6658bde256db5f0327bdc [First version of the Ghost fluid method for surface tension (Parasitic current test included) Daniel Fuster **20150202121213 Ignore-this: cdb05eac4108182dd649619b0791d24c ] hash: 0000031406-3e5c7d0bb51384defb65e2d4ed5d9fc98041ecf713355a44f42c12a21e0a6d12 [condensing repeated code in common subroutines (mainly related to the Poisson eq solution) Daniel Fuster **20150202133256 Ignore-this: ada5cb6a598ec01e276e937097020976 ] hash: 0000024448-05180c59795881eafb3935d0987b4f94b9cad5ec2727fab78277e7519c415dd9 [Simplified ghost fluid method for surface tension for cartesian meshes Daniel Fuster **20150202134620 Ignore-this: df4f683b2bde434f1fc4b23bc8f932ed ] hash: 0000002205-89a415d2c4ad9ab2f8dbab110a92a8fb0c389000b9093c7e90846471906fb6ed [fix a very minor gnuplot issue. Stephane Zaleski **20150202135848 Ignore-this: 6e82e59f4788fd01176a950c04c26027 ] hash: 0000000562-8981e934367ea7628141162f677f1da44efcb10b4ecb126f79d281a01052e066 [New test case for Capillary wave (theoretical comparison) Daniel Fuster **20150202162944 Ignore-this: a780b5671deaa9c40781e8fd133cabda ] hash: 0000025210-4a2480060bda84059b75692a99778d78e407426c3e80b6d2282d43c251c68dcc [capillary test is now shorter Daniel Fuster **20150202163830 Ignore-this: b0e7e85f281008e7afb8d06278ae6356 ] hash: 0000005930-0b7d669346006eb84a4b09e694642e27167f02f477a0bfecc60ec1792d1a10ac [bug in long test in Capillary Wave Daniel Fuster **20150202171055 Ignore-this: 29dc49624e29b9554c68e5ee14d7e14 ] hash: 0000004900-ddd078f7d7b68235c51c512e8a6b0364b30e3c4b3360ce691de6c9f7ec3ea0d2 [bug fix in momentum BC (thx to Tomas Arrufat) Daniel Fuster **20150202172006 Ignore-this: 1d7c95d7ea1f0d8a5efb6fc4c32a3c3c ] hash: 0000006189-ffce471fbb83b32bf251fcbef3d2b41870e6f324771132781ef59d5047f95945 [more minor gnuplot fixes Stephane Zaleski **20150202190121 Ignore-this: 784c445733d643ac037418210b77b94 ] hash: 0000000453-5b41a6bc119e1e6e9bbc657a7c94f3bce27b56dae0e93afbc53be1be71d45bed [Some outputs for Falling Droplet Test tomas.arrufat@gmail.com**20150202173537 Ignore-this: d9e0cfcb7c516438e3b4b0a6310ee50d ] hash: 0000002510-3654d7e5a82f0de9569b1021650a933007fe5b516d03de7533d91fcae740985e [corrected syntax to create tmp directories in MAC (thx to S. Zaleski) Daniel Fuster **20150202175248 Ignore-this: 2e05a8083c1149b3225bbf67ee5ed2f ] hash: 0000000266-8d3c62ba88f116d764e438ade7d6f7289662c93bdb031607ac9a2e23ec6ce2c5 [Some errors related to the output data of the droplet test have been corrected. tomas.arrufat@gmail.com**20150203163720 Ignore-this: a3979c4e6fbad4620a3e3f5bd38d3d00 ] hash: 0000002533-e162133fa135690897fcb1088a961e636b1dad876f59fa4d91a6a0ced6032dc9 [Bug related to the presence of solid cells corrected in the Ghost Fluid method. tomas.arrufat@gmail.com**20150203164037 Ignore-this: 5bfc2b89b7282da04c612357857081ec ] hash: 0000000544-f82e72616998a3ec5ac51a0dfa28bfcd4fdc69050d98a334fdcd88efc74d0524 [small format changes Daniel Fuster **20150204134338 Ignore-this: d542558348d13bc52cbd8991534f9ea8 ] hash: 0000000966-3b02fb612ce64487854c2e93348e5f73f495a7b39ced58ac865235acf6e48b83 [bug fix when mixing ghost fluids and solids Daniel Fuster **20150204135049 Ignore-this: e453242044532b5993fdca9ace9d20fa ] hash: 0000000743-941919f7066e786227219283d879a14c6c2fcdfeb53a7b5256779e2e8acd5911 [bug fix in check_and_debug_Poisson Daniel Fuster **20150204135458 Ignore-this: e9ab5d22f4d8c3b6c6e78ee0b4b7ac68 ] hash: 0000000235-d9e0341ad4114eb16ac494f1adc4f0e9ad3363b01088650e9d638af2c944d581 [bug fix of previous patch (Stanley) Daniel Fuster **20150204153546 Ignore-this: ba70e4dc6d401b9b9b65d53bb65c88de ] hash: 0000000347-5cbab5fa2eded79eeaaeadeb96145cec0075653d3e5119dda407330cafe9296c [changes_in_setup_for_coflowing-jets.txt ling.stanley@gmail.com**20150204171414 Ignore-this: 65d53c98ce266d0d3114f63b7805d0d8 ] hash: 0000004160-2b80b0be94d07e0c7e81f9d024e046e4703bd68ca2966a8be80482d06fd0953a [Free surface: added RP_test condition to Poisson_BC call in FS lcmalan@gmail.com**20150205082759 Ignore-this: de1bc3415ae217cdc30cd33446ae562d ] hash: 0000000325-bed73004cc956975a85177165b72cc2abffff6ed05aabd51a05fa79c4b985143 [We avoid passing relative array components to the hypre subroutine Daniel Fuster **20150205100331 Ignore-this: ceac191b35a4fcc5bc69dec5c7e52584 ] hash: 0000001429-0fa4a610c5e261bdd7f23a4d25e51e72b0a51c5489b9389d845985561f010652 [add_probes.txt ling.stanley@gmail.com**20150205115131 Ignore-this: 64031699afabc3ce260e0d510d6aac82 ] hash: 0000002469-f984ac8f8795d9473b44b0a1cf909cb72e63db659e38c88f697ee56a6895199b [FreeSurface fix for isolated cavity cells lcmalan@gmail.com**20150205114349 Ignore-this: 76bc07c31b233dde3836cbc04d7f1670 ] hash: 0000000233-b652ba68c7eef7b187bc68ef06cc32130f53323da2dd80182ce8a82c7cd435ec [FreeSurface: revert to using cavity cell curvatures for interface pressure calc lcmalan@gmail.com**20150205140838 Ignore-this: fa0d86615919a6c62e6347578dbdef40 ] hash: 0000001243-0b9d192f3e831b718974c76636e1747f0210fc414574fccb67af7f254bb03e2f [add_probes_for_interface.txt ling.stanley@gmail.com**20150207140130 Ignore-this: cdd32048c8897aa9f5fe1f8bab60c2c3 ] hash: 0000001284-2045d7dcffdd00207f3d43a3a36f47679d6cd37ba5f5bfa7c73acacd01578eea [Small fixes for OCCIGEN tomas.arrufat@gmail.com**20150208200514 Ignore-this: bb1f82c27bf10f5ceb30d8d93dd94ecd ] hash: 0000002413-129a61476120d9466a45b05d25890d38b30fffb094e4aee075349b4b9000d05e [Turbulence statistics calculation is added for quasi-2d geometry. The file turb-vars.dat ling.stanley@gmail.com**20150212112543 Ignore-this: b4cdc8c74cdf3796ac92db06651fa04a stores the sumed values over z direction and also in time. add_calculation_turbulence_statstics.txt ] hash: 0000012318-4ce361e56021ad710272815606023b53e7eaab651b6cb333af88895ae921ec64 [FreeSurface parallel debugging: some corrections lcmalan@gmail.com**20150219174815 Ignore-this: 6b322b5c71d744a2e952ca3ff5fb2679 ] hash: 0000000675-39c83af5cb7afd3b8b128ccf08bfbd33144a44eef5d58dc1433ffaaf24be1fa9 [Added norms to pariscompare3D lcmalan@gmail.com**20150220002223 Ignore-this: 3566ea74886f60a147fa1556ab4f6cb2 ] hash: 0000000727-be0611ebfa01bf1526248560614b42a702d4ff7b774fae084274fea48733c96a [pariscompare3D minor lcmalan@gmail.com**20150220003401 Ignore-this: 1a9cf2293eeb121bc4753f5c951d47ca ] hash: 0000000249-f862713291d996f87511a5c695c358283827c284fa288166017abaf0cdd648a7 [Free Surface parallelism bug correction lcmalan@gmail.com**20150220102828 Ignore-this: da654badffef57570ee0e9def3521de7 ] hash: 0000002351-296f20fbc07c00b0e6a5f0abfcf9711ae778bb3d51b55e887db925701164266a [some-update-turbulence-stats.txt ling.stanley@gmail.com**20150223131442 Ignore-this: fde764d14b776ea1d28b72d85b53b36f ] hash: 0000005765-fe7d61b36c339704a4e92ab8f3a22d4d250435d1b03768aa563b945ea0d52407 [minor changes to curvature and curvature testing. Stephane Zaleski **20150227100530 Ignore-this: 29ece229f2ff26e745f742b5f3dcf440 ] hash: 0000001603-f00eea3525d9cb1ddfcca1403c5c0fb395fbbaa66c3120e2d0de2e64acf3b211 [Free surface towards bubble collapse lcmalan@gmail.com**20150227122909 Ignore-this: 91c1e57d4a51076edde34769017a38a1 This patch is very crude and only works for a single bubble. It does not affect "normal" FS operation when there are no collapsing bubbles present. ] hash: 0000003137-feeda37da2e07003d272ffa56a560ecaab874e71c935b3207714282e6e312f1a [Free surface droplet oscillations additions lcmalan@gmail.com**20150227123242 Ignore-this: c488c8954c4a2c19a7da11550c168621 ] hash: 0000000717-0788d27a03d4b5d7bd121e16e375a2537721d4bf37a27a9b2ef1bb7ca1c97e0d [changes in curvature longtest Stephane Zaleski **20150227182222 Ignore-this: 900fe47ef52c10f6f116f2f5fdc4ec61 ] hash: 0000000317-c7612c82e1c9f9a6b0118b94b6bb4e518b5f68204f495dd78786c4496470bfc3 [towards a compacted ENO formulation (useful for development but not used yet) Daniel Fuster **20150225155121 Ignore-this: 6a4588aca416af37a80c04681c07f824 ] hash: 0000003153-83371a0414cee9a9303a3877c2996844655ee6d5321e1e012a591cf82d0dfe98 [some bugs corrected in the compacted implementation of the ENO scheme Daniel Fuster **20150227174303 Ignore-this: 3f25b7f3eece89ddd6a442671943497c ] hash: 0000001420-46c2d255f7fc221e8e54a08bcc822d21174345843fbe956e08acde7f1679eec8 [another bug fix in compact ENO implementation Daniel Fuster **20150227175826 Ignore-this: 672f77262c7610e92daa97d7b58b7b04 ] hash: 0000000415-06c9cce10481dc063725e2c49016daecd3c3d5bf6e7b3702aa58da0614932fe8 [removed duplicate declaration slope_lim Daniel Fuster **20150228100428 Ignore-this: d2ca155561235537af403dc6a667498c ] hash: 0000000186-db3a75e2d64b2df6264c2736cdacda814a1d2eccaaa8af8a1d6a4e6f36114eb6 [add_norm_order_in_res_calculation.txt ling.stanley@gmail.com**20150302102941 Ignore-this: c50fb278646b26dd04767c53e4a0c82 ] hash: 0000002312-15fe069689738c485e81c836db368d4303f4a8bd72c73a551693c709a701be18 [Tests are done on HYPRE. It is shown that the tolerance for HYPRE solver ling.stanley@gmail.com**20150302120228 Ignore-this: fb24a095c91adf15eb44e20cacbef15f is not consistent with the residual computed by our subroutines. To make sure HYPRE converges, a scale of at least 1e-2 is needed for L2 norm mataches the desired maxError. For Linf norm matches, scale needs to be even smaller. w improve_res_calc_and_add_res_scale_for_HYPRE.txt ] hash: 0000002603-144af4e1113383aafe314b18efa476b2ce207b087d79698d65ae7414f103aaed [When dt varies (dtFlag=2), dt decreases when max velocity in the flow field increases. ling.stanley@gmail.com**20150302171045 Ignore-this: d79c86bd6ccdfda5664ebfc4a2651658 If maxError/dt with fixed maxError is used as the tolerence of pressure solver, the tolerance maybe too large and the pressure solver seem to converge but actually not. Now the tolerance is changed to maxError/MaxDt, where MaxDt is the maximum time step. more_improvement_posisson_solver.txt ] hash: 0000005396-d1b23e037c8094828bec144f9d5637c417c1fb05482a9fcfe5621d15ea94f344 [Extra bug fixes to new ENO advection scheme. tomas.arrufat@gmail.com**20150304104917 Ignore-this: ff8832f92ae1e72fdc137e99b5793bf2 ] hash: 0000001330-0cb47f927f71021bc3d418af4434cf947d18b0cb237f677a8a1f4ea5a7eebf7c [Free Surface set level 3 velocities to zero and minor changes lcmalan@gmail.com**20150304155747 Ignore-this: 3e687a31ce5276321e83b65cc14a43b8 ] hash: 0000003243-f02e4b5280dd60ae5ab79ddcc641dbe162ac11231b99e618aa494b41f561ef97 [More bugs tomas.arrufat@gmail.com**20150304125617 Ignore-this: c0761353a7af5cb07674eeed976f1571 ] hash: 0000002609-ca7c961028c6ce7160c68077637b22f6f64e60cda58c958a8521254d8033af37 [Adding norm of the pressure gradient output to the falling droplet test case. tomas.arrufat@gmail.com**20150306130217 Ignore-this: a043a1729f25a9320e2b7297a70dbf47 ] hash: 0000002159-640d5019a707b946c468dc385475737d7c9bbf558f5d02182baf4db0e48c72c4 [Superbee Advection Scheme Added. tomas.arrufat@gmail.com**20150306151216 Ignore-this: 451474d226940b2bfeb609fc833d732b ] hash: 0000005087-419ffa93af35ed3f82d5a11b8593024b164cf0850ad9e321eacf6c3f014902e5 [on_process_debug_falling_drop.txt ling.stanley@gmail.com**20150310165422 Ignore-this: e1370d818b251f79ce516e81342d04f2 ] hash: 0000001422-c4a8458a3bd0dc8b6799419a20d6b840ef559f26dfe8db11e00425c7e26fc78a [removed pdf calls from gnuplot for portability in Tests Stephane Zaleski **20150316201301 Ignore-this: 10b2351057ca9dd856a3f4553156ec92 ] hash: 0000000320-2bf66f3b9f5c22e6dd3e4dc38381f5996de257a73136c9bc91e137b959375c2c [switch back the non-cubic message to a Warning Stephane Zaleski **20150316201521 Ignore-this: ab58f468caae8b1baecd576124a38872 ] hash: 0000000370-e5b1d8edfb540b9596bf1e2f647eaccdff07949c61bccd4b4aed3f4649d08e6f [removed additional set term pdf lines Stephane Zaleski **20150316204656 Ignore-this: ad40caa67f2374e64e1f6031d34231ba ] hash: 0000001777-3e2a49c20758913bbbe23c10ccd9ae5b5ff44f9e3b2d373aba2e6f29e64fc368 [add-weno-advection-scheme.txt ling.stanley@gmail.com**20150313162133 Ignore-this: fb14203d1cfd6a167bd13e1b78ee1124 ] hash: 0000005221-3010d77ab8f7f16a5f4b0a4d1205ee5444fec6f54542fb2fd90b2b003e8a6ec7 [Free surface, towards a more compact Setuppoisson routine and multiple bubbles lcmalan@gmail.com**20150313094033 Ignore-this: 386ae73f30434474f61f0f88e5c189be ] hash: 0000029600-2e08e22b0d4c0be5372cf29d8705607186cef5d45e7126089a489e57ceb4b297 [Free surface: Allow non-unity density lcmalan@gmail.com**20150313150848 Ignore-this: a50a861781769ede5b207f29c4032af6 ] hash: 0000006442-583324727d4b7fd3b38f069e71afd6547efde0e8900e55e10ee598c79102dd84 [Free surface, using LPPmodules for multiple bubble gas equation of state lcmalan@gmail.com**20150317112152 Ignore-this: 2031389264a26878b4caa7842a63d2ad ] hash: 0000003134-625ff63afe70d8345caf568c7d408a0e5998fabd3af9ec923d6c0d9405d397aa [improve_merging_big_drop_sitting_on_multiple_blocks.txt ling.stanley@gmail.com**20150317130410 Ignore-this: a4ee3c6a72f4194cc9d2bd2b4a46087e ] hash: 0000002212-4b880de2f6c7c9109f745cfc4aef2f6720b65df955fff33783f81b66c01f6c2f [FreeSurface: more on gas state equation using LPP lcmalan@gmail.com**20150317164040 Ignore-this: a9d8b4996aef1106253ecc903c8876bb ] hash: 0000003317-f4bf081eacf8946f015e278c618447ee526ceea6e1b513f70766f1a1af0f1339 [ExpandingCavity test, added inputLPP as required by latest FS additions lcmalan@gmail.com**20150319100742 Ignore-this: 1d0bc051b10cea7a30fb5eb624565f88 ] hash: 0000000936-ce9ec232b587a997060ee0812117270a4d217bad54827aa984feaac575d6415c [Solved a redundancy problem with the droplet test. tomas.arrufat@gmail.com**20150319105149 Ignore-this: 5407631ea2a9f1e96a2c8ae80fca3e18 ] hash: 0000002436-77c8ed169f13b4db55c04d5360e24cec0ff17aab04c9eec2d1e6689cdfcd974b [Adds a FrontDroplet test case. Corrects some issues with Droplet test cases output. Adds a "hardtest" target to the Makefile to catch bad FPEs. Stephane Zaleski **20150319133542 Ignore-this: 2f3faba85085be2e67998979fe4cc5c ] hash: 0000021855-e7d49edd68035f0689d6c05f757198b4122fe53141e5587cd7f84e4a1d8fe29f [implicit none issues. Stephane Zaleski **20150319144240 Ignore-this: e848f6c9e54d6eeb8c06cdfff6bc58d4 ] hash: 0000000603-e6ecd4887878f9ded171d55d6e5c752a60b935aafcff4a16de0d828ae3ef2d3e [declare intrinsic functions erf and rand for compatibility with PGF90 compiler. Stephane Zaleski **20150319150138 Ignore-this: d1518ee1c02627e579871d3438a17a0c ] hash: 0000000360-33c0867745e60f83f8bdc4518f448da3ee202244e0b1a5a3c0ddf2f689a847a0 [add-output-method-for-element_stats-in-lppmodule.txt ling.stanley@gmail.com**20150319151009 Ignore-this: c85eeea20dbe455a0d06642a6f46fe2c ] hash: 0000003346-00fe2d9dc091987430c16c861e7f008df32204d3f5b4455873297e4b62042c76 [improve-nozzle-solid-for-coflowing-jet-case.txt ling.stanley@gmail.com**20150319151130 Ignore-this: fd9bf0e0c0a55432c8ee76b858c5f7a2 ] hash: 0000003213-883220c2be537a91e56e7b337ab6b3af6a7a9d48b19be1c604962ff7493c2823 [A simple approach to reduce number of files. But be careful of the I/O time increase. ling.stanley@gmail.com**20150319152212 Ignore-this: 4c075b9a16291909a21f4a774adb0de8 add-simple-zip-and-tar.txt ] hash: 0000001264-234d571eef65f9f30a634772e2cd26878e4f4482ec73df974016e8c1f645796f [small changes for rand and ifort compatibility Stephane Zaleski **20150319190451 Ignore-this: e4fd4e53b40aa5d758bbc702d78250b4 ] hash: 0000000242-c3d0797dd0bfbe07b4676ebda6178f63bcaedac9269deb6da167f272c668fc59 [Free surface, more improvements towards multiple bubbles lcmalan@gmail.com**20150319154741 Ignore-this: b06c6503eb02398fe56d8ddbb148fc48 ] hash: 0000003956-480fee1089ca852214ed5d44b5df5bce5f82b15a2a3c26f60333d1869bfe2116 [new version of matlab tool vtk2array.m Stephane Zaleski **20150319190544 Ignore-this: a2ecd835b9b7a5241dec4af537399425 The tool now works for n number of processes instead of being hard-coded for the default 8 number of processes. ] hash: 0000010273-98195799988eb1252efce6c9bbe4f4ac38885cc4526f0e5c63694caa1b51aa0b [added some stuff to Front and silo support Stephane Zaleski **20150321143546 Ignore-this: 8fdde2bab190be3c75c4c2e47cd87d46 ] hash: 0000001174-555165ff99e00449c4c848843fe2bb2d77dfef5ea8236be3e94b4a81913a6340 [added a missing file Stephane Zaleski **20150321143839 Ignore-this: b9b28075f7785318b39f7907c14721d5 ] hash: 0000003261-b8fa928a41718dd5befe3a86fc9a76da7438ff40a97e68dc329ea3899f175e9d [fix to the autmotic selection of silo in Test/Droplet Stephane Zaleski **20150321145953 Ignore-this: c882ddad14cd879417a459605b4a20f5 ] hash: 0000000202-fdb27566b8a3758afc7068757f1f97976667d190a669f024a35cffb7a1f01c46 [indentation improved in st_testing.f90 silo option Stephane Zaleski **20150320184135 Ignore-this: e627ed57a526c55770cfa9bfa02d28a9 ] hash: 0000001284-31438b47b3c070e64746c59db65878ba1146b02233de2cc74769a8163c2a64ba [removes Visit savedsession.session files as they are unusable by others because of the path in it. Stephane Zaleski **20150321191249 Ignore-this: 37b882169ab6aa48d05d7685ddf318d0 ] hash: 0000393724-93c4327613128d809c16f4cf1c29d057cefc822602989de054255fd5ff98ae58 [add-back-TagDrop-in-Tests.txt ling.stanley@gmail.com**20150323125635 Ignore-this: 8bd5034367722ba313a41f9800c16f2f ] hash: 0000003972-a3d04f628d56f05b013d498e2e05c2ec048511245a65b9ddccc8e218c5e53083 [Tag-drop-with-periodic-BC.txt ling.stanley@gmail.com**20150323160437 Ignore-this: d01cd0615f92f8156b7fd85af85757c0 ] hash: 0000001199-178ce5016d4062b1f03ee3421275263430ee855d4e417570350a16039f9a39e6 [a_small_bug_in_silo_output.txt ling.stanley@gmail.com**20150325160158 Ignore-this: 1260cb653252b3f37a8dcc9873ef8a54 ] hash: 0000000884-811a1d7b63b0aac8d32adba06c0c748cafbee347b806e3a4374a7d7647ba1f34 [Another small bug in Silo tomas.arrufat@gmail.com**20150325150214 Ignore-this: 55294ce7ea071fab3958454848ec6285 ] hash: 0000000654-427b25697769c6a0fd2f0b894be6c4e0f88c7a0c31e8b6f548ffbd11edb739b9 [Several bugs are fixed in BC. ling.stanley@gmail.com**20150325174303 Ignore-this: 2953f268de2f5f840e0796503d9bddcd 1, SetPressureBC: bdry_cond(4-6) were set as bdry_cond(1-3); 2, The old implementation of pressure boundary condition is not divergence free. This bug was not captured by the Tests/PresPoiseuille due to V is zero. A vortex cannot leave the boundary with the old implementation. The format of SetVelocityBC is cleaned up a little. The convective outflow boundary condition is implemented but not tested yet. ongoing-improvement-BC.txt ] hash: 0000007038-c8ff0452dca68ff3a978cfef82e4d7c289dc4c86aa0424313b9dfc6be2535755 [Free surface clean up, removal of old routines replaced by Setuppoisson_fs_new lcmalan@gmail.com**20150326084420 Ignore-this: 608e592a9f2eebc71858be0a2c0b9f95 ] hash: 0000023898-dc4d70b11fd11f7225f4a2d75c518ea3b8139c8bba92e49d757e9b629528b647 [Free surface call to DropStatistics of LPP module. lcmalan@gmail.com**20150326084543 Ignore-this: bf6cd8369bdee9d9962f20ae3f104ee1 Minor patch, but ensures that only relevant routines are called in LPP for optimum performance. DoLPP must be set to F in inputvof. ] hash: 0000000363-14f7dc99484695a8a4a53978dbd1a2e5f229ac33987d0c8a8c4425b038ba80de [Free surface implementation test if collapsing bubble volume source lcmalan@gmail.com**20150326164937 Ignore-this: 31405e40f298602dbe681a95bb9ae6e9 ] hash: 0000005970-a45aa8bab0427417f58c28c176d9083ba214d5142bd51ced84d241c4eef79e72 [Set ExpandingCavity test to DONOTRUN, pending an update lcmalan@gmail.com**20150326165528 Ignore-this: 508403a991f316451fa7ef045f398d59 ] hash: 0000000180-727c88787e83f1b1272aaa64c60c42e6b4f61676f0de98f5266e39974e929a8f [Updated ExpandingCavity test case lcmalan@gmail.com**20150327114712 Ignore-this: 65c4a08fa5496009ca57d47682d639e4 ] hash: 0000003258-eb108f76382767e3aa04a6dbca453a8d59adad4950089cba2e6c7c3580a50f61 [The pressure BC is improved, the old one is 5, and the new one is 6. ling.stanley@gmail.com**20150327132504 Ignore-this: 7d353a9505ac4471aa41552e75f3e420 With Staggered grid, the pressure BC needs to be handled very carefully. It is challenging to statisfy both divergence free and the du/dn=0, when the flow direction near the boundary is far from perpendicular. Therefore, it is difficult for a vortex to leave the boundary, extra attension is required when pressure BC is used. improve-pressure-BC.txt ] hash: 0000007239-c5631cddc3c34e4eb81a3d27138460caf538e4632759a38dff9362482f6d7a6f [The velocity at the new Pressure BC (BC=6) is modified to guarantee global divergence free. ling.stanley@gmail.com**20150327172000 Ignore-this: 4da5508e0e9a25d3ac8c8d50a9f576b7 The local divergence free and du/dn are relaxed to achieve that. Now the new BC seems to work for 2d jet atomization. further-improvement-pressure-BC.txt ] hash: 0000002006-4af3e96cb326a5a87647a5640ecc4e9dc300a3fa87c305bf52e5972f8c1dfa0a [fix-conflict.txt ling.stanley@gmail.com**20150327172724 Ignore-this: 7de6d3c26291bdb6e6dceb1c94c0645a ] hash: 0000001555-8d0a83e0c7c293f52589d1c8ddbb0f3f5249fe23f7f883bd721afbcf03da44fb [Free surface temporary fix for expanding domain lcmalan@gmail.com**20150326083655 Ignore-this: 3c5ac20a980a9a8043801e572db4ccad ] hash: 0000007482-1d0cd58aa3035259da9c653d385d575baa45e7c06e63c850829789fc24d2588f [FS minor, not recorded in previous patches lcmalan@gmail.com**20150327171946 Ignore-this: 4684f6dea1d6dc983cea9a6483f8c952 ] hash: 0000000811-0ce7183fffa8f5593d9cdb8ab0f0341a4169a5212596a404cc46256f0b1b2cad [generalize-pressure-BC.txt ling.stanley@gmail.com**20150328144348 Ignore-this: d3a4cdbb1abcd1b47af5d535d15abc6f ] hash: 0000004351-1b558af1b37629c0613b61d3bb6565313a8e417dc22b8cda1091c613c116fac4 [add-test-2d-coflowing-jet.txt ling.stanley@gmail.com**20150330115914 Ignore-this: e1140812842678a21d367ad814fe89d9 A Test case is added, which is a 2d coflowing jet with pressure outflow boundary condition. The visit script is included to generate a movie of the interface and velocity vector field. This is a case to test pressure outflow boundary condition. ] hash: 0000000585-06e2cbb5c64f13a0d11ca7a69e91296c63af231cc9140d4e1c06a7507ddcd8d9 [Free Surface ExcandingCavity test minor mods lcmalan@gmail.com**20150330144220 Ignore-this: fbc2a9f8f8abe3d4892281754a668582 ] hash: 0000000693-33e3e57fc72e44610fee043886ae8d4e333468407ad25aa9a5a86b64ee0663c2 [Free surface: use L_inf norm for Poisson solver and MaxDt to non-dimensionalize convergence criteria lcmalan@gmail.com**20150330144352 Ignore-this: 60c274203aab4724dbc7e5c482e0eef9 ] hash: 0000002374-a46a35e940962668cbe9f22244dc740cacc714d9c9d36c3fe1f05a00672bb9ea [FS: Fix for the RP test to correct the bdry velocities lcmalan@gmail.com**20150330205639 Ignore-this: c826b3131b0fcf3365c2bd1e0d92ec9d ] hash: 0000005229-8ee387173fb3ed424dcec6d8470d6663accba2b15103c2cefb6df65181e424ba [add-jet-similar-solution-in-velocity-BC.txt ling.stanley@gmail.com**20150331115115 Ignore-this: f997faa027e049ca72153af8a2449f9f ] hash: 0000003765-12ef488143477df9b5dd470c153e0b3a4e00728b92f44cf3d3567e29e48c40b6 [increase_num_of_tags_for_one_big_drop_in_lppmodules.txt ling.stanley@gmail.com**20150402093721 Ignore-this: fe1099c5ed94e615b8066b470d1688d1 ] hash: 0000001350-a0b1e43877217538d068309c6fb35cfc792855a82265212facb7793b240b235c [correct_bug_in_tag_drop_with_90deg_vofBC.txt ling.stanley@gmail.com**20150403170948 Ignore-this: 1fcd0269f70b615640402a48f77e9699 ] hash: 0000002300-2dcb30b9008716f5298decb526153c2305f25ead7f870604db3b7268a1eb9977 [fixes "a pretty big error" Stephane Zaleski **20150408130444 Ignore-this: d9aeda4fa9f81e24232a7b4b72ff2e3c by Jake Dynes ] hash: 0000000516-416be2b4f0d0482e734d30200a923c5077bc640a7ec37a72fa7c89e234ce17c6 [Added MPI I/O output tomas.arrufat@gmail.com**20150407091148 Ignore-this: 9c43bc2d448af11b73d77043d98dba82 ] hash: 0000007530-f49b8c3a379b468c97aefd1b3ed663ed3609cd5dc00b06d11151bbea9e28c084 [Added post processing utility tomas.arrufat@gmail.com**20150407091739 Ignore-this: 9dcbdb09c18047b375b90f675a00e4ec ] hash: 0000015595-3da66fe16e10b1dfdab4f94b0fa2e5bea3ba3c149c888dfcfe108624e8d1aff2 [Free Surface: Discrete volume source for imploding bubbles and its VTK output lcmalan@gmail.com**20150403163213 Ignore-this: 51fd374d3f3d31accb6843cfd7a0aab9 ] hash: 0000039650-1ee99370b80806fba4a062d9dae299e3bcad2bf1a3819fa25599a93c4f9a5f2c [Modification to timestep size and cfl number calc for Free Surface lcmalan@gmail.com**20150407154913 Ignore-this: 6127cb3c98783b2f296c6d8328cce7a6 ] hash: 0000003195-8763d294f0babb6b8b5a863be1ce353876eae4003ee5206df6856d9b545f43e4 [Added velocity interpolator for MomCons tomas.arrufat@gmail.com**20150409120905 Ignore-this: 4669fb1e74d6d54ec43b1acc269a7778 ] hash: 0000002206-ad4abfbd1b44b90538f68cf8e3b85be0d65707c89eaf77615218f9be28ca1a5c [add-refrerence-file-for-test-TagDrop.txt ling.stanley@gmail.com**20150413163432 Ignore-this: 537d6066f43f0328fc0e17613ef641c6 ] hash: 0000000394-aa19bfb02a6b0c523d5aee2cdbf0054e7dc8bdb1f24cd392e932a8155bdcd6cb [jet-velocity-outlow-in-BC-type4.txt ling.stanley@gmail.com**20150413163530 Ignore-this: 2a1b5bbeba96aa6be2da05e490eb1a2d ] hash: 0000001175-8db3e3d85724c80c045d8bb26d36cb5a4ab0b914299ffff46c2d1ec9186df50e [HYPRE-PFMG-Solver-is-now-working.txt ling.stanley@gmail.com**20150413163922 Ignore-this: c2dd8d37c8ae6f97c2a84eebb74bf11 By default, the SMG solver is used. The PFMG solver is much faster and also scale better. However, PFMG solver is less robust and should be used carefully. ] hash: 0000004166-ba010f73a1a5e2102ee903409248e2aad29ee740eb87fab5977f76fc45f8feb7 [Some minor improvements to pariscompare3D lcmalan@gmail.com**20150415095458 Ignore-this: 98efdf92beeaeb92485e79f63d731934 ] hash: 0000000454-43c1e9482436099c66a4cbaecfc9261819f163ef34008afa5aecf992782b77ad [velocity interpolation improvement in MomCons Daniel Fuster **20150409163747 Ignore-this: 9ec13f169c7bf50c6deb89c25cbb04b9 ] hash: 0000002288-7a6766ca3d744e873c849aee309fb6dc6df500e129e001dc40fadb4d926e9302 [add-HYPRE-GMRES-Solver.txt ling.stanley@gmail.com**20150416133416 Ignore-this: 923b74557d7d1250178fca6d00d20594 The GMRES solver in the HYPRE library is also an option. The PFMG is used as a preconditioner. With number of preconditioning steps around 10, it is still much faster than the SMG solver, but nevertheless slower than the PFMG. Whether GMRES is more stable than PFMG is still not clear and some more tests are required. ] hash: 0000002446-94ba60e184af4dfd0a7c4f2b2efac1ed178bfdb36d35a8a66966880831875869 [Slope limiter is not required for QUICK. ling.stanley@gmail.com**20150416221214 Ignore-this: 2e6821c55c2fc5f6335c13a9d1ea7f85 comment-out-paris-error-for-not-defined-slope-limiter.txt ] hash: 0000000338-521321c10c9df124b492505ae8ed7325fff1be5a5652e6fe3cbb10a80d0744df [some-parameter-tuning-for-HYPRE-solver.txt ling.stanley@gmail.com**20150416221338 Ignore-this: ab4708758f6861526d9c3e66954f8ad3 ] hash: 0000001232-85b09dccc64d8b20075f1875550cd4c97e1b46cdad003fe2de311dd39c94c064 [Progress bar post_utility tomas.arrufat@gmail.com**20150422132832 Ignore-this: b026a2c39e1c5933b441382ed568891f ] hash: 0000000733-860ec954a88523275158e95583dfba2413745f1a55a624a2a1fa6fe59d3bdb06 [Inertia tensor computation in control_droplet test tomas.arrufat@gmail.com**20150422132952 Ignore-this: 825b7950c23e6d81fcfdb381b6d80c6b ] hash: 0000003159-e6bf664c47c22dfd8f89d280e58a6c3c3b19c3869790b528883faf314a141283 [Small bug corrected in post_utility tomas.arrufat@gmail.com**20150422135213 Ignore-this: 990de9da8c73f597b98bb62cf4304f1b ] hash: 0000001153-3ea546b439b2e6aa3883ac0c8f4e9b75ea33f2fd2c803672caf84f6c674395b3 [Corrected error that prevented output_type = 6 to work in SuperMuc tomas.arrufat@gmail.com**20150423141917 Ignore-this: e63daf7e56966545a616b54144f0f740 ] hash: 0000000303-0b0b1bf97b4ce9584d93f67ba27e22d76415265e4a2f6d28b48352002d072ad9 [Free Surface: Implementation using LPP module to handle bubble clouds containing collapsing bubbles (bubbles with very low gas pressure). lcmalan@gmail.com**20150424113204 Ignore-this: 46a345413755da5801d3a10ffedc814 ] hash: 0000026479-14b7dd236e4128e72eaa4571e79877392d9f510b8711c9f114e8fa94f1331b11 [FreeSurface bug fix: correct implementation of volume source for collapse lcmalan@gmail.com**20150424120255 Ignore-this: a4c5082cd85099e471cea771e7b2bac7 ] hash: 0000000591-0c26efaa4798de7d29270c27676556ae4d7a3155f40b6f56778e431a24222232 [Shear test tomas.arrufat@gmail.com**20150428133044 Ignore-this: a5a35bf7187f07fdf5ac718dd00784b8 ] hash: 0000000638-e2396128bacb285ca78858654b98c59bab0e682cf0af01702231300d61251594 [some-minor-changes.txt ling.stanley@gmail.com**20150429152212 Ignore-this: 5ecab064900998d21e0c9aac42ef631e ] hash: 0000001448-0a5624f6cbc44e3b626366a91a86a195dca9cb80a048f6bb20e7ab697190741d [More FreeSurface bubble collapse improvements and bug fixes lcmalan@gmail.com**20150427151429 Ignore-this: 4ddb9b9fa0f76f5138d141f827b38eda ] hash: 0000003943-51d74c337dd9709717740b36d02ba4f6823d49029bcb866519dda5b8f0e2f051 [Free surface more improvements to collapse model lcmalan@gmail.com**20150430133918 Ignore-this: 4762ce8f43c6ff678e6a851c52e38ec3 ] hash: 0000003098-349b2fa8661acaed4a7b795bb09d85bfc11ac64e919b3bdf61f740f4791b0701 [slope is set to zero if the interpolation scheme is not known Daniel Fuster **20150502131050 Ignore-this: 62a16881b763d58efe2acfa2b467ff32 ] hash: 0000000227-51245045ca8c6569b574454f1d7683f7f3fed767442ec015808ab4eb25d73634 [very-minor-fix-nozzlesolid-lppoutput.txt ling.stanley@gmail.com**20150505123623 Ignore-this: 28ab304537855f6f052df75bd3ed18c1 ] hash: 0000000457-94fcd6f3b2588d6b317b10f50e28eb155a0ec58505cf9b534d54528c204638c5 [Free Surface: Some minor MPI changes to set_topology lcmalan@gmail.com**20150506212349 Ignore-this: 113b60227229ea3968c7a655ca001b19 ] hash: 0000002658-992afa3b6c7f763602f22ae25ae068e123006277f761e6cbba59ee27bac49a45 [Free Surface: Wider stencil for bubble removal after collapse and associated MPI calls lcmalan@gmail.com**20150506212456 Ignore-this: 664381eac5c0fbdfe547030e5ce87c1b ] hash: 0000002986-526518843ea5bdb186a5eed61d3fd5a46349fccb952ade0899b804f75d13f047 [Free Surface: gradual acceleration of fluid when extracting from domain lcmalan@gmail.com**20150506212730 Ignore-this: 3d78853b8c77724760793ac4b816d4c7 ] hash: 0000005175-c40e081b7091e335873bfef98156b3874f4c21eaeb1178ba69779106d5c403b1 [Output 6: minor change in unit to avoid conflict with unit 2 used for out lcmalan@gmail.com**20150506213026 Ignore-this: 34d4bf8bd3d9b4396341fd85afe57463 ] hash: 0000001484-932fca69489e8d0c5de7f4a0dfe141ac884f38c6ee37c87feae572cd813dc3ea [Free Surface: removal using effective cleaning radius lcmalan@gmail.com**20150511162508 Ignore-this: 82e52e418ba19b0833c1b1cefdfc9c55 ] hash: 0000004425-69ab9129f4c4827cac2bdb52a3e3005c3f88d534e3e0ab347d1d30fe4d971e0b [New FS approach to clean removed bubbles lcmalan@gmail.com**20150519155918 Ignore-this: 4bcd6d1b8b3a6f6ce91759c158cb254 ] hash: 0000007773-c914c5e91a19496070f82a39e6596a41027b1de0935eb9f968b27f9398c125d9 [FreeSurface alternative P BC at interface lcmalan@gmail.com**20150521093023 Ignore-this: 1442b845f3c1f6fe19850d7aaa90e23f ] hash: 0000001119-ff93f4a7e55ed45c24350057eb8cd8b62238c188207a6f36725fce8568e21f9e [New patch for the MPI_I/O post_utility tool matteo.cenni.ing@gmail.com**20150521101322 Ignore-this: 576c4c06a0cb65e8bd125a2f42df888e ] hash: 0000000440-292e578175fba487ea2ee9ff92c9608f59edd8494337543562509fa8c4474beb [Free surface: correction on Poisson stencil coefficients for interface neighbours lcmalan@gmail.com**20150602130819 Ignore-this: db573bfb6e7ce7ab8945742692461bf6 ] hash: 0000003004-56fc4f944b3208a286d63c5e1dcd665adf5e0143a6e83a0c245f61dc7edc1bfe [Modified random_bubbles to have variable input lcmalan@gmail.com**20150602130949 Ignore-this: 7c846f8d4afaeed7fd93af065167b4df ] hash: 0000000854-ab1119b8fd5d66af044c5581a7bd7c09444db91f17faaad70353bd2173eeafd4 [Free surface: added Rayleigh-Plesset information to restart simulations of type RP_test lcmalan@gmail.com**20150602132031 Ignore-this: f21c8fb9c36fff6ac7668c588e14daec ] hash: 0000001697-5b88e0ff1894d0b999f76b8d0e00f25ec247a65dbb301209f13513d9785e87bf [Random bubbles routine lcmalan@gmail.com**20150605083841 Ignore-this: 6cf2a5230e415552834b995188e99879 Added variables in module_2phase for base radius and coordinate as well as their respective variances to generate random bubbles. There is also a test_type, random_bubs, that calls the routine. The number of bubbles must be greater than 2. ] hash: 0000002223-c5882a98192b8a5c141b929260c830317fd6364627964f03d239ac316f1ca3c1 [More random bubbles lcmalan@gmail.com**20150605084308 Ignore-this: a0b6d21c5c7369154873e2b5a08d940b ] hash: 0000000628-d1c4f014deaa15b3188b2b946cf99e66b05d75fab02620237c89a54b71dfdc8a [improve-lppmodule-for-merging-drops-when-large-number-of-processors-are-used.txt ling.stanley@gmail.com**20150511214607 Ignore-this: 52b2b688a545417d0f9800ab47e5d7fe The performance of lppmodule is improved for cases with large number of processors used. 1, Reduced communication when collecting information of drop pieces distributed in different blocks; 2, Faster search algorithm for finding the complete list of different tags belonging to the same drop. Test is done with 2048 processors. ] hash: 0000008547-0e724c2e316b96e680d4cb88ffefc5cb246f6855e72092c1af8fa882cab635b7 [fix-error-message-in-make-test.txt ling.stanley@gmail.com**20150607220011 Ignore-this: ba23288b3836b56ceab30a20a48fbe5 ] hash: 0000002634-9bd66ee4c5b70a58792268b9086e43a46b698ad3a2778eeb64a5bd5fd38b2e58 [Free surface fix to non-dimensional Poisson FS distance limit and increased limit for catch_divergence lcmalan@gmail.com**20150609111317 Ignore-this: 53e789aa350aa735fe7aff1227a24ed8 ] hash: 0000000767-7c65477c553c524d1bec7319d22cd25d46ccc34749057313976777205854a765 [Output the front in silo format lcmalan@gmail.com**20150624142653 Ignore-this: 5f110c68a007bd30d01d600e2c293cfe When using output_format 3, the front is output in silo format and can be viewed in ViSit. ] hash: 0000002687-c8ade8bf5bb2a3a5955055698d4b59b8ac5de3210c7d1503cfec23534df9fed4 [add-probles-along-line-in-z-direction.txt ling.stanley@gmail.com**20150624094721 Ignore-this: 117f59ad5ddf1a6d9b7b9dd779d11837 ] hash: 0000001431-eaaa2199fa5c0da5eee28d83c886065598fa67a12d3cd1c9a81ec78faac38316 [calc-drop-surface-area-during-tagging.txt ling.stanley@gmail.com**20150624113614 Ignore-this: d20f079e06b8fd6c111e7a8a7668c487 ] hash: 0000005737-a8e54bd3afd2b97dc36ad134e4d64f169d7e626c5b829701372455cb0db23e9b [Add third order stats for turbulent kinetic energy budget. ling.stanley@gmail.com**20150625002617 Ignore-this: c422f628f7bcd496a5a1f61960c6871f Add surface area tensor for interface. Add also velocity gradient for dissipation and taylor scale calculation. add-more-quantities-in-turbulence-stats.txt ] hash: 0000006579-f83b21a27f4e2a539c5eaf9ed5895486bae657d2910eb38d9c8eedaf538c6e23 [Added lines for planar initialization patch lcmalan@gmail.com**20150709144243 Ignore-this: f9ba94ea4df789f4bcd7e55504c20f05 ] hash: 0000000191-48dac0a206d0fd68fe4330dc00d8a2aa42b22082de373607204c63f865c27bd0 [Free Surface MPI improvement in set_topology lcmalan@gmail.com**20150622103005 Ignore-this: 668c124c6cd529a95d4c10eb8618724a ] hash: 0000004504-193db4cf6b649bac7f1bba9dc77d114511b4332fa7977d4172cef2e67956ef8a [Free Surface aggregate timer stats lcmalan@gmail.com**20150622103348 Ignore-this: 9cec394facefda556d237aef7ccafd7a ] hash: 0000000507-3ca46e80280afc8b8afad11ecaee32e0620865e00aee4a702c7197de44de3997 [Free surface avoid calling MomentumDiffusion in FS runs lcmalan@gmail.com**20150622103521 Ignore-this: da73f9fcf4c6ab024af6fc49e5cea2e5 ] hash: 0000003167-fc8fc927c1213af306bacfb6ffe0e81a8767ff6392748f2ca63e47822963c5b8 [FreeSurface: minor changes for Capillary wave tests and RP tests initialization lcmalan@gmail.com**20150701132533 Ignore-this: db055621d14aa8d317cdbb08734eb61b ] hash: 0000002334-564f96bf79e9da0809f88adad54e5d9a98d8b00cd17693b30f7147e15bd89c9f [Planar initialization for VOF lcmalan@gmail.com**20150709142526 Ignore-this: e22381475993fe27128158b461f9d490 A function is added in order to initialize a VOF field with a planar description. The input parameter file takes 4 parameters: plane and n_p(1..3). The plane is given by plane = n_p(1)*x + n_p(2)*y + n_p(3)*z ] hash: 0000001872-b6c79552996000b289626237b9c1ae8e3466ec10b8610559b755145b527c6a21 [Output option to write point3D data for the centroids of the interface. lcmalan@gmail.com**20150709144422 Ignore-this: db9adef9ce67ac46dcd214d07529fd23 In the inputvof parameter file out_centroid can be set to T to write at NOUT intervals the locations of interface centroids of each cut cell. This can be viewed in ViSit using the centroids.visit index file and works in parallel. ] hash: 0000003249-0b12b3be84139ed290b2eed0091dbea86a09f0dd177e1dcc26d3ee040d465b07 [some-minor-change-for-output.txt ling.stanley@gmail.com**20150704213947 Ignore-this: c731ca9b4adb189827fd3429da2a659b ] hash: 0000001330-6959e20fa58224e9426cb84dea708697d5eff405cd07fb95ac00014bbbabe970 [improve_memory_use_in_merging_drop_and_turbublent_stats_output.txt ling.stanley@gmail.com**20150720110447 Ignore-this: 89ba3e2ee7b36a5410c50872ffb03dcc ] hash: 0000008895-84f7437c393faa1976dddea9052ea862f38f4ca2f47a1f9c970c8412d162e19f [add-surface-in-tagdrop-test.txt ling.stanley@gmail.com**20150720111324 Ignore-this: ac0cdfd6a3edc51ad6cab983f346e68a ] hash: 0000000257-65c27f8004644cdc471cfda0672332b8f813e32e8e47bf5f8613d2323e7eba71 [new_subroutine_to_clean_vof_debris.txt ling.stanley@gmail.com**20150720170459 Ignore-this: 1fa3529be9a1e741d9e3e7e0d6d42008 ] hash: 0000003400-188ea982369be6f927dd24037064d5fd1bdf4119eeee1752eb5723762e2fb5d9 [add_ifdef_for_front_silo_format.txt ling.stanley@gmail.com**20150721092951 Ignore-this: 35af891d20e0f753fe194dd25b131e63 ] hash: 0000000455-c48845114240d538e94c3b14062af390f89efe4dcd3d3cf78da99e6b9a56ba3e [further_improvement_on_lppmodule_memory_use.txt ling.stanley@gmail.com**20150721093033 Ignore-this: debac17e6070fbf47007af98fa233694 ] hash: 0000002351-9db70c372473db4ab52fce1b7747192d03d48bdaf58bdee86bd734a1f068f899 [fix-bug-clean-debris.txt ling.stanley@gmail.com**20150721152119 Ignore-this: 7ac263e72700eee6da6337bad448c04d ] hash: 0000000461-68b23997ada1115b1aeb9bf3230c638b49c839dc00f32050b275959113d6614e [further_improvement_tag-and-merge_droplets.txt ling.stanley@gmail.com**20150723160508 Ignore-this: 696123631b9375244fb61282ef84ab58 ] hash: 0000003544-b5209f1d1f45dba3bc78c9b934dd775ff537b194ec4d57b78fb4d3bbc163db8c [for_debug_clean_debris.txt ling.stanley@gmail.com**20150723163001 Ignore-this: 8e4fb600e2380c81bf4a6c9ef7e6bfa6 ] hash: 0000001485-78cac9b17ffcaf5553ae5f9faf9a808b1f5773c0a6177bb50e1d1dc1216b725f [Some values for FS debugging lcmalan@gmail.com**20150622103203 Ignore-this: 4a7fd36aaec5aaeb92e27407d9474c40 ] hash: 0000003520-fc6c9de9740f6c2e5e4ae45d6c3d5e67fd1ef5a6c3d0acf6a54a7d78ac9b3386 [FreeSurface: New setuppoisson using heights lcmalan@gmail.com**20150729145535 Ignore-this: f9352b2ee7463dfbfaee1c450d98fc6b ] hash: 0000048206-76093f68b39970d61d3d8ec66d210a3ffaf4da32c07be7959db67698b3d393fc [FreeSurface cleanup and other minor lcmalan@gmail.com**20150729151637 Ignore-this: 6d94e628f39cedc6559d788ddcdfcbf9 ] hash: 0000002682-6f40fcdf84ab2dc4054ad99206657ae7c46e824f7dc356d1e47fa8aa0abdf5ab [Correction in calculation of L2 norm in NewSolver lcmalan@gmail.com**20150729151748 Ignore-this: 4336fd59059e2593898f086cbfe28e1 ] hash: 0000000256-154331e466d68d37c46658998d5aa50f29956006e3e4aa8bfb06482dc303ee69 [Stats for rising bubble test lcmalan@gmail.com**20150729151931 Ignore-this: a5b123ece799063a0e735a4f2232699f ] hash: 0000001003-d97a05bbd1c891f3daea758f944f52d79465b46294bf0adc3534587ffa2c71bf [Corrected removal of global normal declaration lcmalan@gmail.com**20150729152349 Ignore-this: 4403939760a7a88b3dfe8b67b9b09653 ] hash: 0000000224-ff1e473b43cfb5c3bffa553c30691e1466172317843ee46c309d722ee3fab37a [Removal of output call to global curvatures lcmalan@gmail.com**20150729154011 Ignore-this: 18cea9aa57609982b31eb429cf34d30a ] hash: 0000000749-189e3400738af7075ced7406cd2458578ff5278d2bcdeb4f34c5d1d22d062669 [More accurate format for RP test values when restarting lcmalan@gmail.com**20150729160701 Ignore-this: 2134c4ea1bccb806bb3920092cca54cc ] hash: 0000000216-b89023d060f4c320492df0cacbd9e730f7b97d457e6a328e45b4d504bfd91618 [fix_small_bug_in_lpp.txt ling.stanley@gmail.com**20150730064957 Ignore-this: 38ddd977b74fb3aae9eacab1f487a488 ] hash: 0000000178-02407b94451659c13516a0dd0c194de51fe19a2d96fa71839ebff3cd6ddac741 [dynamic_adjust_poi_solver_tolerance.txt ling.stanley@gmail.com**20150730065436 Ignore-this: 3bb3b468bcecf05144ac4e910a28fe2a ] hash: 0000002188-36cdd9d8c724a126446f88d08f13a7c2b2558e32ca186af07f7d25d9df42f5a0 [Curvature output lcmalan@gmail.com**20150812130958 Ignore-this: c8a4375c8adb006e376fcd6fcbbed22e ] hash: 0000002958-c2d7c1aacf5d475164e1a0a23d3c206d30db2e321feddfdbe7e007a8d5ba8a17 [Parallelism and initialisation of gas pressures in FreeSolver lcmalan@gmail.com**20150812131524 Ignore-this: e8f29d718b86d15970b83ba49282891e ] hash: 0000000393-fec4e96d457442d84748aadd7a50c6714eda02d219bde4023b50de83fe67e1a8 [Slight modification to gradual increase in outflow velocity for free surface bubble simulations lcmalan@gmail.com**20150812131833 Ignore-this: 3b32c8eb60dac7a9f5d6e6afbc66b03d ] hash: 0000000444-7403245fef65f147785da3a7b35850025370dd4c2ed0fc8aebb7d2abb28d1e35 [minor: FreeSurface outputs and other lcmalan@gmail.com**20150812132002 Ignore-this: dd9e155fb898104825a7dfe4d3b2bc97 ] hash: 0000000923-5c5a9222f01dd054ea0eda3ca331e2e798fe67683f2daa0e43f880b2de76d505 [Added reference pressure for restarting Rayleigh-Plesset tests with FreeSurface bubbles lcmalan@gmail.com**20150812132109 Ignore-this: 959134ab0d303ce91a45f82c89318b08 ] hash: 0000000694-26599b8c1e5e64683129929fe0cef66067749f769d01ca49ee0d8b382edd36a9 [Correction to random bubbles lcmalan@gmail.com**20150812132152 Ignore-this: 82f830142531190fd5cf04799a0127d5 ] hash: 0000000582-008b6e590cd08274049ef6ca10a5c96553b71056b39c1845d931fbc9ea757231 [Silo for sub-timestep outputs lcmalan@gmail.com**20150812185456 Ignore-this: 826e78f96d5f07d5ca914357d426be02 ] hash: 0000004429-b3eb39463d93ce3416c706116fa24dff59017cb1e9f74f3d3ca838586fbe5a52 [Random bubble generator: made seed random using Fortran function TIME() lcmalan@gmail.com**20150818093449 Ignore-this: f310805b90f1a537aecfaa874e8f7079 ] hash: 0000000321-eea953690f4cce72306f14c73dbdc39010abf159d9ef33dabd6f014f5b27fd25 [minor changes, discussed in the meeting today. Stephane Zaleski **20150911152702 Ignore-this: d60cbb3b6472e8c31016609f24565612 ] hash: 0000000638-a29da42608b3bf9d55b2c9fd3e35389a8001c9e089c12ad295d415b495c6f2d1 [removes an error in longtest curvature. Stephane Zaleski **20150913173915 Ignore-this: d0288778e3731aa9732adf7cecd34a30 ] hash: 0000000652-4596da00e964e183f69feac3bde17a866503f0d601334853ed8c3213ec54fe3b [Curvature stats output at every NOUT intervals lcmalan@gmail.com**20150911130603 Ignore-this: 45a275e4bbd3d4c5e59b5eb0275b6322 ] hash: 0000000898-85a0b6f32549e8255468665cfbe6ce1bedbc44d3499b67272d52f02334a97633 [For FreeSurface 2nd order velocity extrapolation using least-square fits is now available lcmalan@gmail.com**20150911131222 Ignore-this: f7a1bc998ed8d980233aa5848ac0be5 ] hash: 0000016572-55cf0ab74f1d130356d9410151900805d5d635d94fb9062cff43228221f595f5 [FreeSurface: weighted average for curvature at interface lcmalan@gmail.com**20150911131904 Ignore-this: 8c792aee6f6ba5a7111c522cbede11af ] hash: 0000006245-c3c1be9769691800540c329647d7c3100e4ecf96ee93cd4e757281cb1d315c11 [Undetermined curvature for pure, non-bulk cells set to max value of 2d6 lcmalan@gmail.com**20150911153219 Ignore-this: a68579bf1d98cf1b232bc95a4fbbb55a ] hash: 0000000424-105e14ad734b570ccbaca9971d8de64d298f02e23a628afaa2897421515bebd9 [FreeSurface output index correction lcmalan@gmail.com**20150911163636 Ignore-this: 590b79881e63a736ed6cb7bb85a7c29b ] hash: 0000000279-0cf9549ab550de0210cf8da0c0b6f927e025231e3dc4cfe6b33d9ef3288ded7a [various minor changes to surface tension testing routines. Stephane Zaleski **20150913205741 Ignore-this: 493ba01aec12aee33b9c1c6f5ef5b90 ] hash: 0000002265-e1933d7bc723752a275ae82b9d5b8bc45fec0fe466f667c8fb02e7ed24c7473d [minor changes in curvature longtest. Changes comment in surface_tension.f90. Stephane Zaleski **20150914143925 Ignore-this: 486475ad9cf481aa70d51a05b130b45b ] hash: 0000001354-12f429b67cd5dddafd368e13eb9716972ac61d418fb2628d259707b34c74cda0 [Moved clean_debris routine to vofmodules.f90. lcmalan@gmail.com**20150916150150 Ignore-this: 1061deb274d649beec360be58efc2dc0 The clean debris routine is moved to vofmodules.f90, allowing it to be used withoud using the lpp module. The clean_debris parameters used are the same, but are now set in inputvof. ] hash: 0000010068-ec4be4170ba537bfbf3f88234a530db13ea2bd715e0cf61d7833c32c435a693a [LPP tagging: make reference phase variable lcmalan@gmail.com**20150917145256 Ignore-this: 3c58ea67d8e4fed5a9ce5d47b81d8358 By setting the tracked_phase parameter, the reference phase for the tagging algorithm can be set to either VOF=1 or VOF=0 phase. ] hash: 0000002442-300c69425378d2dcaa1e7512fab66581e3b54048e3dbfc6c906d0f2e488324d1 [FreeSurface 2nd order extrapolation: fixes division by zero and detects errors leading to velocity NaN lcmalan@gmail.com**20150917153604 Ignore-this: 775442974f77f4365417d327fdb65e9 ] hash: 0000005224-791f73b09e2e9ff68e2e411989a0f39ffff7aa60f10b3003063a1e649265137d [FreeSurface: for cut cells, use an average curvature weighted by the cut length parameter theta lcmalan@gmail.com**20150917153826 Ignore-this: 61e167ccec2a6290d9bfff5cb19005a2 ] hash: 0000003239-fc25814ca6d7de17130d9ecec13defd1f2faddfc7727b5ecaaea9057d9619279 [Changed variable seed to rand_seed to deal with SuperMUC conflict lcmalan@gmail.com**20150925165627 Ignore-this: 6d78f7c557dc2137a50c52325627ce8a ] hash: 0000000403-4234f0d65bd9f62bca8a4e0daef3eee73956b8692fd0e0f331bbcc99fb4e5383 [DO NOT PUSH Free surface comment out debugging in catch_divergence lcmalan@gmail.com**20150622125815 Ignore-this: 85503801aa7cd0962c61f341f132f08e ] hash: 0000005670-7254cb0af6cc52d5a8f25df87ba285e98413268dc36ffaa448f58a9b19853990 [FreeSurface changes: Improved bubble collapse handling, HYPRE matrix setup and other minor lcmalan@gmail.com**20150928132053 Ignore-this: 68ab380ae897c9bbe5a4b582ba67d5dc ] hash: 0000036151-a6d41e28ddd8bfe6fa5b7cbd4d19e22199df7b1f431f0e6017c3cd9d1dfde976 [Curvature output option using output type 4 lcmalan@gmail.com**20150928134650 Ignore-this: 14d830c1857cbc5e51954b03d18e3f63 ] hash: 0000000501-c2477553e2b718203166fcdb3d798fece0c0a323ba0971b3df7fdee65e336d4e [FreeSurface: correction to removal routine for detached liquid trapped inside gas lcmalan@gmail.com**20150928135511 Ignore-this: 1fe5a4be377e7606d4d3b5d28e64d36c ] hash: 0000001087-ffa3568afb5ccde91663f4659522cc0bedec992395f0bfe876ae3a629b36bd7c [Random seed filter to ensure minimum bubble seed distance lcmalan@gmail.com**20150928135829 Ignore-this: 6c699b004ad0a9c9cfad8144d6b6a693 ] hash: 0000001788-fdee6095444900db1a5f2c3fb053e6043d04b4496b1b2917d4508004a29815ab [FreeSurface: separate initialization lcmalan@gmail.com**20150928140204 Ignore-this: 335e7ac16ba8e8485b44bf18d50fc3be ] hash: 0000003682-1f88b06502f293af539a31289fa600b35bd1d7d30dd8ad6f029f72002d1bedcf [Clean debris method by using mixed cell number count lcmalan@gmail.com**20150928140430 Ignore-this: 67c6cdd8fd5b3474f4920dcb3f1c83b6 ] hash: 0000003491-155c78807f471aee0bdfc50166933a75fe24c411b3fd6e418ed53828cb194515 [Minor FreeSurface fix and element_stat debugging output lcmalan@gmail.com**20150928142040 Ignore-this: a18539a0f89a20f2c8b7f19d458e6bae ] hash: 0000001105-5f9e5c53694b7313efb489e75a8eb166ddbe044621b33317e7906820e8aa5e07 [More FreeSurface, follows from previous patch lcmalan@gmail.com**20150928142655 Ignore-this: 546c3829763cbd74fcf53770cf9f104a ] hash: 0000010062-9bdc144b5fb070b81cbf375e23c8afca5f1a8ee5a900d1506540fd33e7211af1 [minor, comment out debugging output for tagging element stats lcmalan@gmail.com**20150930093054 Ignore-this: 3911a4a2ad1b504fae4a55476c8c1c03 ] hash: 0000000581-8e362ea885f4dd8cf063ae775d00ca2272055e70ecdbb14c388a7af0f7ee6125 [Random bubble generation with filter: communicate new bubble nr to all ranks lcmalan@gmail.com**20150930093404 Ignore-this: 9d5eefd59205701d5eb59f7770dfd523 ] hash: 0000000457-9d9d7100d86839f9465aa1cd7c876e9261b20c585712b95aeb55b282e7585461 [Routine to generate bubbles in a cubic lattice lcmalan@gmail.com**20150930093515 Ignore-this: b278d4e5bb838024cf62e37675ffa875 ] hash: 0000002482-2ebe4ce17133e3eb1f45fab86ac7b1702b9b2c17e832d9daed133aaa9c471c07 [Heights extension in get_heights_pass3 limited to MAX_EXT_H cells. lcmalan@gmail.com**20151008120439 Ignore-this: 7a29a3aad58464451362bfb20d821f7 ] hash: 0000000774-36267feb6182d44b4b7993c9d138156e73902f7f89a26541d01d03e3d1de3616 [Curvature parallelism test tolerance correction and other test changes lcmalan@gmail.com**20151008140709 Ignore-this: 20409b2c63959ddbe7c9252737063c24 ] hash: 0000001304-f04c0bc3f0b13e22ce3f4a9586210cae0eddd1c8f97a061f3592d7b8c414421f [FS_par_test update lcmalan@gmail.com**20151012161343 Ignore-this: 661170c6fad09b4c089f55501a61bc76 ] hash: 0000000775-69f2b2d9ccff93364519b0f8363401faf35f76f535393dd0fe70325e300c7d7e [FreeSurface minor output updates lcmalan@gmail.com**20151012162930 Ignore-this: 889ad366e37f8ce29417791e167e4993 ] hash: 0000000915-98f9523402ec80328be0be1c053f164d934bf84121eadc73bcf1720df1683af3 [Surface tension: set MAX_HEIGHT_EXTENSION to 1 cell, remove unused variables, increase kappa_max to 4 lcmalan@gmail.com**20151012163043 Ignore-this: 6fc1da9b586bb740e7bdaa8aa5bf4abc ] hash: 0000000796-672adb8baba1e9a5f31474f62735aa34638c16e5bfed804c79749a6bc4925c10 [FreeSurface: initialize stray liquid check to false lcmalan@gmail.com**20151012163248 Ignore-this: c862b27d696515d86dcf7a50043fd644 ] hash: 0000000234-3198e21fc6031b28bf65873114f4ce1af375a3aae71fcf9dbc7b7b183bd0bd79 [minor lcmalan@gmail.com**20151012163358 Ignore-this: 22f73f495f57f7160b123141c5a98ee7 ] hash: 0000000425-5115e6cf57e4236b2655f488a27e75368fb898f2d7086bb6e94eaee68e38150b [minor changes and debris cell curvature is now invalid (= 2d6, CAUTION !) Stephane Zaleski **20151014115051 Ignore-this: 66e1e24de3c48e836b66243112a6f7dd In some situations when curvature cannot be computed kappa is set to 2d6 and the surface tension force should not be computed. This behavior has been extended to some types of debris cells. ] hash: 0000002301-72f44ca7edd71853ed131b144ee9fd08d2774d9bce373b3a32ec17cb61b8a104 [FS_par_test set branch limit lcmalan@gmail.com**20151013090126 Ignore-this: 50acf24403ce3a79f895923d56c77688 ] hash: 0000000163-e685e2abe74861c0525234c37d2b90cde66d1ef51fa6a369abb2afbe37add168 [more minor FS_par_test updates lcmalan@gmail.com**20151013112346 Ignore-this: 7f6bb81c0b06b1239f58c26d7ef4993b ] hash: 0000000876-e253c4bf2248febf665d37c929b7dca4ba0b3bf4748e0e194c1c6b01036c1e95 [corrected mistake with the way scripts are launched, minor changes in error computation. Stephane Zaleski **20151015214650 Ignore-this: c5d9f36a3fe9e95b8c603677b37ae198 ] hash: 0000000996-83edef6d512530d654cadf9350b7140c681d2102afa3b6951dba226473f60d13 [A collections of changes to the curvature finding routines. Stephane Zaleski **20151017212524 Ignore-this: 3a15edea954bfd9b713e0cce2687c7e3 None of these changes is expercted to have a major effect and preliminary tests show that it does not. However it touches core elements of the curvature computation so apply with care. ] hash: 0000008128-59332a7b8a12941a22a075456665f2190adcfaaf41ada2b025e1f09e4d50acd7 [fixes the Height/longtest. It was only a bug in the testing, not in the height calculation. Stephane Zaleski **20151017231945 Ignore-this: b6acaf3d27b106478b701dfd7788cdf6 ] hash: 0000006342-74e37ad4ac314390fa3c0b57a8f1e20210ea276c72af6339ee375cf054e2eca3 [reverts the change to get_heights_pass3 that was mistakenly recorded in the previous patch. Stephane Zaleski **20151018001126 Ignore-this: 1cbca2af6f4171d115ec17fb597297e7 It is an attempt to fix the issue of heights being extended indefintely in one direction and very little in the other. The previous record destroyed some changes by Leon but made the issue somewhat worse, so this new patch reinstates Leon's changes. But the subroutine still needs fixing. ] hash: 0000001050-8fa1187dd9aee15fa886701ae8079066a1dd63847f3be335f8e6c3b2de026db2 [small changes to surface tension and curvature testing (minor) Stephane Zaleski **20151022155206 Ignore-this: d2d31e9a467544a4208bc38d55677ff7 ] hash: 0000001787-b1e1989739e4683bd0849d69be535cee3b537242029e882b95b389d3271ad5fd [removes heights_pass3 + minor change in Tests Stephane Zaleski **20151022155715 Ignore-this: f7c6710e0076642f09c9698989ed5651 Heights pass3 behaves strangely and needs fixing. In the meantime it is deactivated. ] hash: 0000009422-0aaa80dbf409f2af092377551f8a08b697da8611fc594a18f69c564515a77b02 [minor changes to tests Stephane Zaleski **20151023155036 Ignore-this: 38fbf9e640353108c71947535edf40a6 ] hash: 0000001324-87326ffb4b3050b2c53eab982ad65f23438e6fb88f9343964b239a236572cd82